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A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510436/ https://www.ncbi.nlm.nih.gov/pubmed/22781547 http://dx.doi.org/10.1016/j.mito.2012.06.009 |
_version_ | 1782251468309397504 |
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author | Yarham, John W. McFarland, Robert Taylor, Robert W. Elson, Joanna L. |
author_facet | Yarham, John W. McFarland, Robert Taylor, Robert W. Elson, Joanna L. |
author_sort | Yarham, John W. |
collection | PubMed |
description | Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence. We demonstrate that intra-species MTT sequence variation is sufficiently low for sequence data from a single organism to adequately represent a species. On this basis, we propose a standardised panel of organisms for conservation assessment and describe integration of this conservation panel into a pathogenicity scoring system designed to assess mt-tRNA variation associated with mitochondrial disease. |
format | Online Article Text |
id | pubmed-3510436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Elsevier Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35104362012-12-05 A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations Yarham, John W. McFarland, Robert Taylor, Robert W. Elson, Joanna L. Mitochondrion Article Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence. We demonstrate that intra-species MTT sequence variation is sufficiently low for sequence data from a single organism to adequately represent a species. On this basis, we propose a standardised panel of organisms for conservation assessment and describe integration of this conservation panel into a pathogenicity scoring system designed to assess mt-tRNA variation associated with mitochondrial disease. Elsevier Science 2012-09 /pmc/articles/PMC3510436/ /pubmed/22781547 http://dx.doi.org/10.1016/j.mito.2012.06.009 Text en © 2012 Elsevier B.V. https://creativecommons.org/licenses/by/3.0/ Open Access under CC BY 3.0 (https://creativecommons.org/licenses/by/3.0/) license |
spellingShingle | Article Yarham, John W. McFarland, Robert Taylor, Robert W. Elson, Joanna L. A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title | A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title_full | A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title_fullStr | A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title_full_unstemmed | A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title_short | A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations |
title_sort | proposed consensus panel of organisms for determining evolutionary conservation of mt-trna point mutations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510436/ https://www.ncbi.nlm.nih.gov/pubmed/22781547 http://dx.doi.org/10.1016/j.mito.2012.06.009 |
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