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A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations

Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence....

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Detalles Bibliográficos
Autores principales: Yarham, John W., McFarland, Robert, Taylor, Robert W., Elson, Joanna L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510436/
https://www.ncbi.nlm.nih.gov/pubmed/22781547
http://dx.doi.org/10.1016/j.mito.2012.06.009
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author Yarham, John W.
McFarland, Robert
Taylor, Robert W.
Elson, Joanna L.
author_facet Yarham, John W.
McFarland, Robert
Taylor, Robert W.
Elson, Joanna L.
author_sort Yarham, John W.
collection PubMed
description Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence. We demonstrate that intra-species MTT sequence variation is sufficiently low for sequence data from a single organism to adequately represent a species. On this basis, we propose a standardised panel of organisms for conservation assessment and describe integration of this conservation panel into a pathogenicity scoring system designed to assess mt-tRNA variation associated with mitochondrial disease.
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spelling pubmed-35104362012-12-05 A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations Yarham, John W. McFarland, Robert Taylor, Robert W. Elson, Joanna L. Mitochondrion Article Assigning pathogenicity to mt-tRNA variants requires multiple strands of evidence. Evolutionary conservation is often considered mandatory, but lack of a standard panel of organisms to assess conservation complicates comparison between reports and undermines the value of conservation-based evidence. We demonstrate that intra-species MTT sequence variation is sufficiently low for sequence data from a single organism to adequately represent a species. On this basis, we propose a standardised panel of organisms for conservation assessment and describe integration of this conservation panel into a pathogenicity scoring system designed to assess mt-tRNA variation associated with mitochondrial disease. Elsevier Science 2012-09 /pmc/articles/PMC3510436/ /pubmed/22781547 http://dx.doi.org/10.1016/j.mito.2012.06.009 Text en © 2012 Elsevier B.V. https://creativecommons.org/licenses/by/3.0/ Open Access under CC BY 3.0 (https://creativecommons.org/licenses/by/3.0/) license
spellingShingle Article
Yarham, John W.
McFarland, Robert
Taylor, Robert W.
Elson, Joanna L.
A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title_full A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title_fullStr A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title_full_unstemmed A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title_short A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations
title_sort proposed consensus panel of organisms for determining evolutionary conservation of mt-trna point mutations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510436/
https://www.ncbi.nlm.nih.gov/pubmed/22781547
http://dx.doi.org/10.1016/j.mito.2012.06.009
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