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A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering
BACKGROUND: The emergence and spread of multidrug-resistant organisms (MDROs) are causing a global crisis. Combating antimicrobial resistance requires prevention of transmission of resistant organisms and improved use of antimicrobials. OBJECTIVES: To develop a Web-based information system for autom...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Gunther Eysenbach
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510772/ https://www.ncbi.nlm.nih.gov/pubmed/23195868 http://dx.doi.org/10.2196/jmir.2056 |
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author | Tseng, Yi-Ju Wu, Jung-Hsuan Ping, Xiao-Ou Lin, Hui-Chi Chen, Ying-Yu Shang, Rung-Ji Chen, Ming-Yuan Lai, Feipei Chen, Yee-Chun |
author_facet | Tseng, Yi-Ju Wu, Jung-Hsuan Ping, Xiao-Ou Lin, Hui-Chi Chen, Ying-Yu Shang, Rung-Ji Chen, Ming-Yuan Lai, Feipei Chen, Yee-Chun |
author_sort | Tseng, Yi-Ju |
collection | PubMed |
description | BACKGROUND: The emergence and spread of multidrug-resistant organisms (MDROs) are causing a global crisis. Combating antimicrobial resistance requires prevention of transmission of resistant organisms and improved use of antimicrobials. OBJECTIVES: To develop a Web-based information system for automatic integration, analysis, and interpretation of the antimicrobial susceptibility of all clinical isolates that incorporates rule-based classification and cluster analysis of MDROs and implements control chart analysis to facilitate outbreak detection. METHODS: Electronic microbiological data from a 2200-bed teaching hospital in Taiwan were classified according to predefined criteria of MDROs. The numbers of organisms, patients, and incident patients in each MDRO pattern were presented graphically to describe spatial and time information in a Web-based user interface. Hierarchical clustering with 7 upper control limits (UCL) was used to detect suspicious outbreaks. The system’s performance in outbreak detection was evaluated based on vancomycin-resistant enterococcal outbreaks determined by a hospital-wide prospective active surveillance database compiled by infection control personnel. RESULTS: The optimal UCL for MDRO outbreak detection was the upper 90% confidence interval (CI) using germ criterion with clustering (area under ROC curve (AUC) 0.93, 95% CI 0.91 to 0.95), upper 85% CI using patient criterion (AUC 0.87, 95% CI 0.80 to 0.93), and one standard deviation using incident patient criterion (AUC 0.84, 95% CI 0.75 to 0.92). The performance indicators of each UCL were statistically significantly higher with clustering than those without clustering in germ criterion (P < .001), patient criterion (P = .04), and incident patient criterion (P < .001). CONCLUSION: This system automatically identifies MDROs and accurately detects suspicious outbreaks of MDROs based on the antimicrobial susceptibility of all clinical isolates. |
format | Online Article Text |
id | pubmed-3510772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Gunther Eysenbach |
record_format | MEDLINE/PubMed |
spelling | pubmed-35107722012-12-28 A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering Tseng, Yi-Ju Wu, Jung-Hsuan Ping, Xiao-Ou Lin, Hui-Chi Chen, Ying-Yu Shang, Rung-Ji Chen, Ming-Yuan Lai, Feipei Chen, Yee-Chun J Med Internet Res Original Paper BACKGROUND: The emergence and spread of multidrug-resistant organisms (MDROs) are causing a global crisis. Combating antimicrobial resistance requires prevention of transmission of resistant organisms and improved use of antimicrobials. OBJECTIVES: To develop a Web-based information system for automatic integration, analysis, and interpretation of the antimicrobial susceptibility of all clinical isolates that incorporates rule-based classification and cluster analysis of MDROs and implements control chart analysis to facilitate outbreak detection. METHODS: Electronic microbiological data from a 2200-bed teaching hospital in Taiwan were classified according to predefined criteria of MDROs. The numbers of organisms, patients, and incident patients in each MDRO pattern were presented graphically to describe spatial and time information in a Web-based user interface. Hierarchical clustering with 7 upper control limits (UCL) was used to detect suspicious outbreaks. The system’s performance in outbreak detection was evaluated based on vancomycin-resistant enterococcal outbreaks determined by a hospital-wide prospective active surveillance database compiled by infection control personnel. RESULTS: The optimal UCL for MDRO outbreak detection was the upper 90% confidence interval (CI) using germ criterion with clustering (area under ROC curve (AUC) 0.93, 95% CI 0.91 to 0.95), upper 85% CI using patient criterion (AUC 0.87, 95% CI 0.80 to 0.93), and one standard deviation using incident patient criterion (AUC 0.84, 95% CI 0.75 to 0.92). The performance indicators of each UCL were statistically significantly higher with clustering than those without clustering in germ criterion (P < .001), patient criterion (P = .04), and incident patient criterion (P < .001). CONCLUSION: This system automatically identifies MDROs and accurately detects suspicious outbreaks of MDROs based on the antimicrobial susceptibility of all clinical isolates. Gunther Eysenbach 2012-10-24 /pmc/articles/PMC3510772/ /pubmed/23195868 http://dx.doi.org/10.2196/jmir.2056 Text en ©Yi-Ju Tseng, Jung-Hsuan Wu, Xiao-Ou Ping, Hui-Chi Lin, Ying-Yu Chen, Rung-Ji Shang, Ming-Yuan Chen, Feipei Lai, Yee-Chun Chen. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 24.10.2012. http://creativecommons.org/licenses/by/2.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on http://www.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Tseng, Yi-Ju Wu, Jung-Hsuan Ping, Xiao-Ou Lin, Hui-Chi Chen, Ying-Yu Shang, Rung-Ji Chen, Ming-Yuan Lai, Feipei Chen, Yee-Chun A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title | A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title_full | A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title_fullStr | A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title_full_unstemmed | A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title_short | A Web-Based Multidrug-Resistant Organisms Surveillance and Outbreak Detection System with Rule-Based Classification and Clustering |
title_sort | web-based multidrug-resistant organisms surveillance and outbreak detection system with rule-based classification and clustering |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510772/ https://www.ncbi.nlm.nih.gov/pubmed/23195868 http://dx.doi.org/10.2196/jmir.2056 |
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