Cargando…

Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package

OBJECTIVE: We previously developed a flexible specification of the UNAIDS Estimation and Projection Package (EPP) that relied on splines to generate time-varying values for the force of infection parameter. Here, we test the feasibility of this approach for concentrated HIV/AIDS epidemics with very...

Descripción completa

Detalles Bibliográficos
Autores principales: Hogan, Daniel R, Salomon, Joshua A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3512430/
https://www.ncbi.nlm.nih.gov/pubmed/23172346
http://dx.doi.org/10.1136/sextrans-2012-050652
_version_ 1782251724034015232
author Hogan, Daniel R
Salomon, Joshua A
author_facet Hogan, Daniel R
Salomon, Joshua A
author_sort Hogan, Daniel R
collection PubMed
description OBJECTIVE: We previously developed a flexible specification of the UNAIDS Estimation and Projection Package (EPP) that relied on splines to generate time-varying values for the force of infection parameter. Here, we test the feasibility of this approach for concentrated HIV/AIDS epidemics with very sparse data and compare two methods for making short-term future projections with the spline-based model. METHODS: Penalised B-splines are used to model the average infection risk over time within the EPP 2011 modelling framework, which includes antiretroviral treatment effects and CD4 cell count progression, and is fit to sentinel surveillance prevalence data with a Bayesian algorithm. We compare two approaches for future projections: (1) an informative prior related to equilibrium prevalence and (2) a random walk formulation. RESULTS: The spline-based model produced plausible fits across a range of epidemics, which included 87 subpopulations from 14 countries with concentrated epidemics and 75 subpopulations from 33 countries with generalised epidemics. The equilibrium prior and random walk approaches to future projections yielded similar prevalence estimates, and both performed well in tests of out-of-sample predictive validity for prevalence. In contrast, in some cases the two approaches varied substantially in estimates of incidence, with the random walk formulation avoiding extreme changes in incidence. CONCLUSIONS: A spline-based approach to allowing the force of infection parameter to vary over time within EPP 2011 is robust across a diverse array of epidemics, including concentrated ones with limited surveillance data. Future work on the EPP model should consider the impact that different modelling approaches have on estimates of HIV incidence.
format Online
Article
Text
id pubmed-3512430
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher BMJ Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-35124302012-12-14 Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package Hogan, Daniel R Salomon, Joshua A Sex Transm Infect Supplement OBJECTIVE: We previously developed a flexible specification of the UNAIDS Estimation and Projection Package (EPP) that relied on splines to generate time-varying values for the force of infection parameter. Here, we test the feasibility of this approach for concentrated HIV/AIDS epidemics with very sparse data and compare two methods for making short-term future projections with the spline-based model. METHODS: Penalised B-splines are used to model the average infection risk over time within the EPP 2011 modelling framework, which includes antiretroviral treatment effects and CD4 cell count progression, and is fit to sentinel surveillance prevalence data with a Bayesian algorithm. We compare two approaches for future projections: (1) an informative prior related to equilibrium prevalence and (2) a random walk formulation. RESULTS: The spline-based model produced plausible fits across a range of epidemics, which included 87 subpopulations from 14 countries with concentrated epidemics and 75 subpopulations from 33 countries with generalised epidemics. The equilibrium prior and random walk approaches to future projections yielded similar prevalence estimates, and both performed well in tests of out-of-sample predictive validity for prevalence. In contrast, in some cases the two approaches varied substantially in estimates of incidence, with the random walk formulation avoiding extreme changes in incidence. CONCLUSIONS: A spline-based approach to allowing the force of infection parameter to vary over time within EPP 2011 is robust across a diverse array of epidemics, including concentrated ones with limited surveillance data. Future work on the EPP model should consider the impact that different modelling approaches have on estimates of HIV incidence. BMJ Publishing Group 2012-12 /pmc/articles/PMC3512430/ /pubmed/23172346 http://dx.doi.org/10.1136/sextrans-2012-050652 Text en Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions This is an open-access article distributed under the terms of the Creative Commons Attribution Non-commercial License, which permits use, distribution, and reproduction in any medium, provided the original work is properly cited, the use is non commercial and is otherwise in compliance with the license. See: http://creativecommons.org/licenses/by-nc/3.0/ and http://creativecommons.org/licenses/by-nc/3.0/legalcode
spellingShingle Supplement
Hogan, Daniel R
Salomon, Joshua A
Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title_full Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title_fullStr Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title_full_unstemmed Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title_short Spline-based modelling of trends in the force of HIV infection, with application to the UNAIDS Estimation and Projection Package
title_sort spline-based modelling of trends in the force of hiv infection, with application to the unaids estimation and projection package
topic Supplement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3512430/
https://www.ncbi.nlm.nih.gov/pubmed/23172346
http://dx.doi.org/10.1136/sextrans-2012-050652
work_keys_str_mv AT hogandanielr splinebasedmodellingoftrendsintheforceofhivinfectionwithapplicationtotheunaidsestimationandprojectionpackage
AT salomonjoshuaa splinebasedmodellingoftrendsintheforceofhivinfectionwithapplicationtotheunaidsestimationandprojectionpackage