Cargando…

TranSeqAnnotator: large-scale analysis of transcriptomic data

BACKGROUND: The transcriptome of an organism can be studied with the analysis of expressed sequence tag (EST) data sets that offers a rapid and cost effective approach with several new and updated bioinformatics approaches and tools for assembly and annotation. The comprehensive analyses comprehend...

Descripción completa

Detalles Bibliográficos
Autores principales:	Menon, Ranjeeta, Garg, Gagan, Gasser, Robin B, Ranganathan, Shoba
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521237/ https://www.ncbi.nlm.nih.gov/pubmed/23282024 http://dx.doi.org/10.1186/1471-2105-13-S17-S24

Ejemplares similares

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications
por: Menon, Ranjeeta, et al.
Publicado: (2012)

In silico secretome analysis approach for next generation sequencing transcriptomic data
por: Garg, Gagan, et al.
Publicado: (2011)

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)
por: Garg, Gagan, et al.
Publicado: (2012)

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches
por: Nagaraj, Shivashankar H, et al.
Publicado: (2008)

Evaluation of a large-scale biomedical data annotation initiative
por: Lacson, Ronilda, et al.
Publicado: (2009)

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data
por: Beck, Tim, et al.
Publicado: (2009)

Towards large-scale sample annotation in gene expression repositories
por: Pitzer, Erik, et al.
Publicado: (2009)

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors
por: Kong, Lesheng, et al.
Publicado: (2008)

Network analysis of human protein location
por: Kumar, Gaurav, et al.
Publicado: (2010)

In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance
por: Khanna, Varun, et al.
Publicado: (2011)

Physiochemical property space distribution among human metabolites, drugs and toxins
por: Khanna, Varun, et al.
Publicado: (2009)

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases
por: Chacko, Elsa, et al.
Publicado: (2009)

Towards the integration, annotation and association of historical microarray experiments with RNA-seq
por: Chavan, Shweta S, et al.
Publicado: (2013)

pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes
por: Khan, Javed Mohammed, et al.
Publicado: (2010)

A multi-species comparative structural bioinformatics analysis of inherited mutations in α-D-Mannosidase reveals strong genotype-phenotype correlation
por: Khan, Javed Mohammed, et al.
Publicado: (2009)

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data
por: Picardi, Ernesto, et al.
Publicado: (2009)

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform
por: Nagaraj, Shivashankar H., et al.
Publicado: (2007)

A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation
por: Huynh, Thi, et al.
Publicado: (2011)

Needles in the EST Haystack: Large-Scale Identification and Analysis of Excretory-Secretory (ES) Proteins in Parasitic Nematodes Using Expressed Sequence Tags (ESTs)
por: Nagaraj, Shivashankar H., et al.
Publicado: (2008)

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage
por: Choo, Khar Heng, et al.
Publicado: (2008)

SVM-based prediction of caspase substrate cleavage sites
por: Wee, Lawrence JK, et al.
Publicado: (2006)

A comprehensive assessment of N-terminal signal peptides prediction methods
por: Choo, Khar Heng, et al.
Publicado: (2009)

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
por: Wang, Ying, et al.
Publicado: (2011)

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
por: Zhao, Qiong-Yi, et al.
Publicado: (2011)

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris
por: Tong, Joo Chuan, et al.
Publicado: (2006)

A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era
por: Tan, Tin Wee, et al.
Publicado: (2009)

A multi-factor model for caspase degradome prediction
por: Wee, Lawrence JK, et al.
Publicado: (2009)

Integrating biological data – the Distributed Annotation System
por: Jenkinson, Andrew M, et al.
Publicado: (2008)

Facilitating functional annotation of chicken microarray data
por: Buza, Teresia J, et al.
Publicado: (2009)

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite
por: Wang, Xi, et al.
Publicado: (2011)

Towards human-computer synergetic analysis of large-scale biological data
por: Singh, Rahul, et al.
Publicado: (2013)

Mapping of trans-acting regulatory factors from microarray data
por: McClintick, Jeanette N, et al.
Publicado: (2007)

Analysis of genome-wide association data by large-scale Bayesian logistic regression
por: Wang, Yuanjia, et al.
Publicado: (2009)

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome
por: Liu, Yu-Chen, et al.
Publicado: (2016)

Combining heterogeneous data sources for accurate functional annotation of proteins
por: Sokolov, Artem, et al.
Publicado: (2013)

Towards reliable isoform quantification using RNA-SEQ data
por: Howard, Brian E, et al.
Publicado: (2010)

A comprehensive rat transcriptome built from large scale RNA-seq-based annotation
por: Ji, Xiangjun, et al.
Publicado: (2020)

Secretome: clues into pathogen infection and clinical applications
por: Ranganathan, Shoba, et al.
Publicado: (2009)

FastAnnotator- an efficient transcript annotation web tool
por: Chen, Ting-Wen, et al.
Publicado: (2012)

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology
por: Hoehndorf, Robert, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_eonu7pu346b074ccb15shnc6ua