A review of software for microarray genotyping

The focus of this review is software for the genotyping of microarray single nucleotide polymorphisms, in particular software for Affymetrix and Illumina arrays. Different statistical principles and ideas have been applied to the construction of genotyping algorithms -- for example, likelihood versu...

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Detalles Bibliográficos
Autores principales: Lamy, Philippe, Grove, Jakob, Wiuf, Carsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Software Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525235/
https://www.ncbi.nlm.nih.gov/pubmed/21712191
http://dx.doi.org/10.1186/1479-7364-5-4-304
Descripción
Sumario:The focus of this review is software for the genotyping of microarray single nucleotide polymorphisms, in particular software for Affymetrix and Illumina arrays. Different statistical principles and ideas have been applied to the construction of genotyping algorithms -- for example, likelihood versus Bayesian modelling, and whether to genotype one or all arrays at a time. The release of new arrays is generally followed by new, or updated, algorithms.

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