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Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation

Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findi...

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Autores principales: Kalra, Hina, Simpson, Richard J., Ji, Hong, Aikawa, Elena, Altevogt, Peter, Askenase, Philip, Bond, Vincent C., Borràs, Francesc E., Breakefield, Xandra, Budnik, Vivian, Buzas, Edit, Camussi, Giovanni, Clayton, Aled, Cocucci, Emanuele, Falcon-Perez, Juan M., Gabrielsson, Susanne, Gho, Yong Song, Gupta, Dwijendra, Harsha, H. C., Hendrix, An, Hill, Andrew F., Inal, Jameel M., Jenster, Guido, Krämer-Albers, Eva-Maria, Lim, Sai Kiang, Llorente, Alicia, Lötvall, Jan, Marcilla, Antonio, Mincheva-Nilsson, Lucia, Nazarenko, Irina, Nieuwland, Rienk, Nolte-'t Hoen, Esther N. M., Pandey, Akhilesh, Patel, Tushar, Piper, Melissa G., Pluchino, Stefano, Prasad, T. S. Keshava, Rajendran, Lawrence, Raposo, Graca, Record, Michel, Reid, Gavin E., Sánchez-Madrid, Francisco, Schiffelers, Raymond M., Siljander, Pia, Stensballe, Allan, Stoorvogel, Willem, Taylor, Douglas, Thery, Clotilde, Valadi, Hadi, van Balkom, Bas W. M., Vázquez, Jesús, Vidal, Michel, Wauben, Marca H. M., Yáñez-Mó, María, Zoeller, Margot, Mathivanan, Suresh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525526/
https://www.ncbi.nlm.nih.gov/pubmed/23271954
http://dx.doi.org/10.1371/journal.pbio.1001450
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author Kalra, Hina
Simpson, Richard J.
Ji, Hong
Aikawa, Elena
Altevogt, Peter
Askenase, Philip
Bond, Vincent C.
Borràs, Francesc E.
Breakefield, Xandra
Budnik, Vivian
Buzas, Edit
Camussi, Giovanni
Clayton, Aled
Cocucci, Emanuele
Falcon-Perez, Juan M.
Gabrielsson, Susanne
Gho, Yong Song
Gupta, Dwijendra
Harsha, H. C.
Hendrix, An
Hill, Andrew F.
Inal, Jameel M.
Jenster, Guido
Krämer-Albers, Eva-Maria
Lim, Sai Kiang
Llorente, Alicia
Lötvall, Jan
Marcilla, Antonio
Mincheva-Nilsson, Lucia
Nazarenko, Irina
Nieuwland, Rienk
Nolte-'t Hoen, Esther N. M.
Pandey, Akhilesh
Patel, Tushar
Piper, Melissa G.
Pluchino, Stefano
Prasad, T. S. Keshava
Rajendran, Lawrence
Raposo, Graca
Record, Michel
Reid, Gavin E.
Sánchez-Madrid, Francisco
Schiffelers, Raymond M.
Siljander, Pia
Stensballe, Allan
Stoorvogel, Willem
Taylor, Douglas
Thery, Clotilde
Valadi, Hadi
van Balkom, Bas W. M.
Vázquez, Jesús
Vidal, Michel
Wauben, Marca H. M.
Yáñez-Mó, María
Zoeller, Margot
Mathivanan, Suresh
author_facet Kalra, Hina
Simpson, Richard J.
Ji, Hong
Aikawa, Elena
Altevogt, Peter
Askenase, Philip
Bond, Vincent C.
Borràs, Francesc E.
Breakefield, Xandra
Budnik, Vivian
Buzas, Edit
Camussi, Giovanni
Clayton, Aled
Cocucci, Emanuele
Falcon-Perez, Juan M.
Gabrielsson, Susanne
Gho, Yong Song
Gupta, Dwijendra
Harsha, H. C.
Hendrix, An
Hill, Andrew F.
Inal, Jameel M.
Jenster, Guido
Krämer-Albers, Eva-Maria
Lim, Sai Kiang
Llorente, Alicia
Lötvall, Jan
Marcilla, Antonio
Mincheva-Nilsson, Lucia
Nazarenko, Irina
Nieuwland, Rienk
Nolte-'t Hoen, Esther N. M.
Pandey, Akhilesh
Patel, Tushar
Piper, Melissa G.
Pluchino, Stefano
Prasad, T. S. Keshava
Rajendran, Lawrence
Raposo, Graca
Record, Michel
Reid, Gavin E.
Sánchez-Madrid, Francisco
Schiffelers, Raymond M.
Siljander, Pia
Stensballe, Allan
Stoorvogel, Willem
Taylor, Douglas
Thery, Clotilde
Valadi, Hadi
van Balkom, Bas W. M.
Vázquez, Jesús
Vidal, Michel
Wauben, Marca H. M.
Yáñez-Mó, María
Zoeller, Margot
Mathivanan, Suresh
author_sort Kalra, Hina
collection PubMed
description Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field.
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spelling pubmed-35255262012-12-27 Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation Kalra, Hina Simpson, Richard J. Ji, Hong Aikawa, Elena Altevogt, Peter Askenase, Philip Bond, Vincent C. Borràs, Francesc E. Breakefield, Xandra Budnik, Vivian Buzas, Edit Camussi, Giovanni Clayton, Aled Cocucci, Emanuele Falcon-Perez, Juan M. Gabrielsson, Susanne Gho, Yong Song Gupta, Dwijendra Harsha, H. C. Hendrix, An Hill, Andrew F. Inal, Jameel M. Jenster, Guido Krämer-Albers, Eva-Maria Lim, Sai Kiang Llorente, Alicia Lötvall, Jan Marcilla, Antonio Mincheva-Nilsson, Lucia Nazarenko, Irina Nieuwland, Rienk Nolte-'t Hoen, Esther N. M. Pandey, Akhilesh Patel, Tushar Piper, Melissa G. Pluchino, Stefano Prasad, T. S. Keshava Rajendran, Lawrence Raposo, Graca Record, Michel Reid, Gavin E. Sánchez-Madrid, Francisco Schiffelers, Raymond M. Siljander, Pia Stensballe, Allan Stoorvogel, Willem Taylor, Douglas Thery, Clotilde Valadi, Hadi van Balkom, Bas W. M. Vázquez, Jesús Vidal, Michel Wauben, Marca H. M. Yáñez-Mó, María Zoeller, Margot Mathivanan, Suresh PLoS Biol Community Page Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field. Public Library of Science 2012-12-18 /pmc/articles/PMC3525526/ /pubmed/23271954 http://dx.doi.org/10.1371/journal.pbio.1001450 Text en © 2012 Kalra et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Community Page
Kalra, Hina
Simpson, Richard J.
Ji, Hong
Aikawa, Elena
Altevogt, Peter
Askenase, Philip
Bond, Vincent C.
Borràs, Francesc E.
Breakefield, Xandra
Budnik, Vivian
Buzas, Edit
Camussi, Giovanni
Clayton, Aled
Cocucci, Emanuele
Falcon-Perez, Juan M.
Gabrielsson, Susanne
Gho, Yong Song
Gupta, Dwijendra
Harsha, H. C.
Hendrix, An
Hill, Andrew F.
Inal, Jameel M.
Jenster, Guido
Krämer-Albers, Eva-Maria
Lim, Sai Kiang
Llorente, Alicia
Lötvall, Jan
Marcilla, Antonio
Mincheva-Nilsson, Lucia
Nazarenko, Irina
Nieuwland, Rienk
Nolte-'t Hoen, Esther N. M.
Pandey, Akhilesh
Patel, Tushar
Piper, Melissa G.
Pluchino, Stefano
Prasad, T. S. Keshava
Rajendran, Lawrence
Raposo, Graca
Record, Michel
Reid, Gavin E.
Sánchez-Madrid, Francisco
Schiffelers, Raymond M.
Siljander, Pia
Stensballe, Allan
Stoorvogel, Willem
Taylor, Douglas
Thery, Clotilde
Valadi, Hadi
van Balkom, Bas W. M.
Vázquez, Jesús
Vidal, Michel
Wauben, Marca H. M.
Yáñez-Mó, María
Zoeller, Margot
Mathivanan, Suresh
Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title_full Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title_fullStr Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title_full_unstemmed Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title_short Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
title_sort vesiclepedia: a compendium for extracellular vesicles with continuous community annotation
topic Community Page
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525526/
https://www.ncbi.nlm.nih.gov/pubmed/23271954
http://dx.doi.org/10.1371/journal.pbio.1001450
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