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A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans
Substantial progress has been made in identification of type 2 diabetes (T2D) risk loci in the past few years, but our understanding of the genetic basis of T2D in ethnically diverse populations remains limited. We performed a genome-wide association study and a replication study in Chinese Hans com...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Diabetes Association
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526061/ https://www.ncbi.nlm.nih.gov/pubmed/22961080 http://dx.doi.org/10.2337/db12-0454 |
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author | Li, Huaixing Gan, Wei Lu, Ling Dong, Xiao Han, Xueyao Hu, Cheng Yang, Zhen Sun, Liang Bao, Wei Li, Pengtao He, Meian Sun, Liangdan Wang, Yiqin Zhu, Jingwen Ning, Qianqian Tang, Yong Zhang, Rong Wen, Jie Wang, Di Zhu, Xilin Guo, Kunquan Zuo, Xianbo Guo, Xiaohui Yang, Handong Zhou, Xianghai Zhang, Xuejun Qi, Lu Loos, Ruth J.F. Hu, Frank B. Wu, Tangchun Liu, Ying Liu, Liegang Yang, Ze Hu, Renming Jia, Weiping Ji, Linong Li, Yixue Lin, Xu |
author_facet | Li, Huaixing Gan, Wei Lu, Ling Dong, Xiao Han, Xueyao Hu, Cheng Yang, Zhen Sun, Liang Bao, Wei Li, Pengtao He, Meian Sun, Liangdan Wang, Yiqin Zhu, Jingwen Ning, Qianqian Tang, Yong Zhang, Rong Wen, Jie Wang, Di Zhu, Xilin Guo, Kunquan Zuo, Xianbo Guo, Xiaohui Yang, Handong Zhou, Xianghai Zhang, Xuejun Qi, Lu Loos, Ruth J.F. Hu, Frank B. Wu, Tangchun Liu, Ying Liu, Liegang Yang, Ze Hu, Renming Jia, Weiping Ji, Linong Li, Yixue Lin, Xu |
author_sort | Li, Huaixing |
collection | PubMed |
description | Substantial progress has been made in identification of type 2 diabetes (T2D) risk loci in the past few years, but our understanding of the genetic basis of T2D in ethnically diverse populations remains limited. We performed a genome-wide association study and a replication study in Chinese Hans comprising 8,569 T2D case subjects and 8,923 control subjects in total, from which 10 single nucleotide polymorphisms were selected for further follow-up in a de novo replication sample of 3,410 T2D case and 3,412 control subjects and an in silico replication sample of 6,952 T2D case and 11,865 control subjects. Besides confirming seven established T2D loci (CDKAL1, CDKN2A/B, KCNQ1, CDC123, GLIS3, HNF1B, and DUSP9) at genome-wide significance, we identified two novel T2D loci, including G-protein–coupled receptor kinase 5 (GRK5) (rs10886471: P = 7.1 × 10(−9)) and RASGRP1 (rs7403531: P = 3.9 × 10(−9)), of which the association signal at GRK5 seems to be specific to East Asians. In nondiabetic individuals, the T2D risk-increasing allele of RASGRP1-rs7403531 was also associated with higher HbA(1c) and lower homeostasis model assessment of β-cell function (P = 0.03 and 0.0209, respectively), whereas the T2D risk-increasing allele of GRK5-rs10886471 was also associated with higher fasting insulin (P = 0.0169) but not with fasting glucose. Our findings not only provide new insights into the pathophysiology of T2D, but may also shed light on the ethnic differences in T2D susceptibility. |
format | Online Article Text |
id | pubmed-3526061 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | American Diabetes Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-35260612014-01-01 A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans Li, Huaixing Gan, Wei Lu, Ling Dong, Xiao Han, Xueyao Hu, Cheng Yang, Zhen Sun, Liang Bao, Wei Li, Pengtao He, Meian Sun, Liangdan Wang, Yiqin Zhu, Jingwen Ning, Qianqian Tang, Yong Zhang, Rong Wen, Jie Wang, Di Zhu, Xilin Guo, Kunquan Zuo, Xianbo Guo, Xiaohui Yang, Handong Zhou, Xianghai Zhang, Xuejun Qi, Lu Loos, Ruth J.F. Hu, Frank B. Wu, Tangchun Liu, Ying Liu, Liegang Yang, Ze Hu, Renming Jia, Weiping Ji, Linong Li, Yixue Lin, Xu Diabetes Genetics/Genomes/Proteomics/Metabolomics Substantial progress has been made in identification of type 2 diabetes (T2D) risk loci in the past few years, but our understanding of the genetic basis of T2D in ethnically diverse populations remains limited. We performed a genome-wide association study and a replication study in Chinese Hans comprising 8,569 T2D case subjects and 8,923 control subjects in total, from which 10 single nucleotide polymorphisms were selected for further follow-up in a de novo replication sample of 3,410 T2D case and 3,412 control subjects and an in silico replication sample of 6,952 T2D case and 11,865 control subjects. Besides confirming seven established T2D loci (CDKAL1, CDKN2A/B, KCNQ1, CDC123, GLIS3, HNF1B, and DUSP9) at genome-wide significance, we identified two novel T2D loci, including G-protein–coupled receptor kinase 5 (GRK5) (rs10886471: P = 7.1 × 10(−9)) and RASGRP1 (rs7403531: P = 3.9 × 10(−9)), of which the association signal at GRK5 seems to be specific to East Asians. In nondiabetic individuals, the T2D risk-increasing allele of RASGRP1-rs7403531 was also associated with higher HbA(1c) and lower homeostasis model assessment of β-cell function (P = 0.03 and 0.0209, respectively), whereas the T2D risk-increasing allele of GRK5-rs10886471 was also associated with higher fasting insulin (P = 0.0169) but not with fasting glucose. Our findings not only provide new insights into the pathophysiology of T2D, but may also shed light on the ethnic differences in T2D susceptibility. American Diabetes Association 2013-01 2012-12-13 /pmc/articles/PMC3526061/ /pubmed/22961080 http://dx.doi.org/10.2337/db12-0454 Text en © 2013 by the American Diabetes Association. Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered. See http://creativecommons.org/licenses/by-nc-nd/3.0/ for details. |
spellingShingle | Genetics/Genomes/Proteomics/Metabolomics Li, Huaixing Gan, Wei Lu, Ling Dong, Xiao Han, Xueyao Hu, Cheng Yang, Zhen Sun, Liang Bao, Wei Li, Pengtao He, Meian Sun, Liangdan Wang, Yiqin Zhu, Jingwen Ning, Qianqian Tang, Yong Zhang, Rong Wen, Jie Wang, Di Zhu, Xilin Guo, Kunquan Zuo, Xianbo Guo, Xiaohui Yang, Handong Zhou, Xianghai Zhang, Xuejun Qi, Lu Loos, Ruth J.F. Hu, Frank B. Wu, Tangchun Liu, Ying Liu, Liegang Yang, Ze Hu, Renming Jia, Weiping Ji, Linong Li, Yixue Lin, Xu A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title | A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title_full | A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title_fullStr | A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title_full_unstemmed | A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title_short | A Genome-Wide Association Study Identifies GRK5 and RASGRP1 as Type 2 Diabetes Loci in Chinese Hans |
title_sort | genome-wide association study identifies grk5 and rasgrp1 as type 2 diabetes loci in chinese hans |
topic | Genetics/Genomes/Proteomics/Metabolomics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526061/ https://www.ncbi.nlm.nih.gov/pubmed/22961080 http://dx.doi.org/10.2337/db12-0454 |
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