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Compression of next-generation sequencing reads aided by highly efficient de novo assembly

We present Quip, a lossless compression algorithm for next-generation sequencing data in the FASTQ and SAM/BAM formats. In addition to implementing reference-based compression, we have developed, to our knowledge, the first assembly-based compressor, using a novel de novo assembly algorithm. A proba...

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Detalles Bibliográficos
Autores principales:	Jones, Daniel C., Ruzzo, Walter L., Peng, Xinxia, Katze, Michael G.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526293/ https://www.ncbi.nlm.nih.gov/pubmed/22904078 http://dx.doi.org/10.1093/nar/gks754

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