Cargando…

SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies

Hybrid zones are noteworthy systems for the study of environmental adaptation to fast-changing environments, as they constitute reservoirs of polymorphism and are key to the maintenance of biodiversity. They can move in relation to climate fluctuations, as temperature can affect both selection and m...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pante, Eric, Rohfritsch, Audrey, Becquet, Vanessa, Belkhir, Khalid, Bierne, Nicolas, Garcia, Pascale
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530552/ https://www.ncbi.nlm.nih.gov/pubmed/23300636 http://dx.doi.org/10.1371/journal.pone.0052302

Ejemplares similares

Correction: SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies
por: Pante, Eric, et al.
Publicado: (2013)

LAMP‐based molecular sexing in a gonochoric marine bivalve (Macoma balthica rubra) with divergent sex‐specific mitochondrial genomes
por: Le Cam, Sabrina, et al.
Publicado: (2023)

Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities
por: Saunier, Alice, et al.
Publicado: (2014)

The Early Life History of the Clam Macoma balthica in a High CO(2) World
por: Van Colen, Carl, et al.
Publicado: (2012)

Confirmation of the first intronic sequence in the bivalvian mitochondrial genome of Macoma balthica (Linnaeus, 1758)
por: Lubośny, Marek, et al.
Publicado: (2022)

Molecular diet analysis enables detection of diatom and cyanobacteria DNA in the gut of Macoma balthica
por: Garrison, Julie A., et al.
Publicado: (2022)

Geographic and seasonal patterns and limits on the adaptive response to temperature of European Mytilus spp. and Macoma balthica populations
por: Jansen, Jeroen M., et al.
Publicado: (2007)

Histopathologic and histochemical biomarker responses of Baltic clam, Macoma balthica, to contaminated Sydney Harbour sediment, Nova Scotia, Canada.
por: Tay, Kok-Leng, et al.
Publicado: (2003)

Effects of Reduced pH on Macoma balthica Larvae from a System with Naturally Fluctuating pH-Dynamics
por: Jansson, Anna, et al.
Publicado: (2013)

Transcriptomic responses to predator kairomones in embryos of the aquatic snail Radix balthica
por: Tills, Oliver, et al.
Publicado: (2018)

Short-Term and Long-Term Biological Effects of Chronic Chemical Contamination on Natural Populations of a Marine Bivalve
por: Breitwieser, Marine, et al.
Publicado: (2016)

Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks
por: Cokus, Shawn J., et al.
Publicado: (2015)

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
por: Feldmeyer, Barbara, et al.
Publicado: (2011)

Population genomics shed light on the demographic and adaptive histories of European invasion in the Pacific oyster, Crassostrea gigas
por: Rohfritsch, Audrey, et al.
Publicado: (2013)

Distinct stages of the intestinal bacterial community of Ampullaceana balthica after salinization
por: Kivistik, Carmen, et al.
Publicado: (2022)

Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria
por: Capt, Charlotte, et al.
Publicado: (2020)

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
por: Howe, Glenn T, et al.
Publicado: (2013)

On the evolutionary ecology of symbioses between chemosynthetic bacteria and bivalves
por: Roeselers, Guus, et al.
Publicado: (2012)

Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery
por: Patnaik, Bharat Bhusan, et al.
Publicado: (2016)

The longest mitochondrial protein in metazoans is encoded by the male-transmitted mitogenome of the bivalve Scrobicularia plana
por: Tassé, Mélanie, et al.
Publicado: (2022)

Behaviour of freshwater snails (Radix balthica) exposed to the pharmaceutical sertraline under simulated predation risk
por: Hedgespeth, Melanie Lea, et al.
Publicado: (2018)

Molecular genetic diversity of seaweeds morphologically related to Ulva rigida at three sites along the French Atlantic coast
por: Dartois, Manon, et al.
Publicado: (2021)

De Novo Assembly and Transcriptome Analysis of the Rubber Tree (Hevea brasiliensis) and SNP Markers Development for Rubber Biosynthesis Pathways
por: Mantello, Camila Campos, et al.
Publicado: (2014)

Complex mitogenomic rearrangements within the Pectinidae (Mollusca: Bivalvia)
por: Malkócs, Tamás, et al.
Publicado: (2022)

Adaptation of Lymnaea fuscus and Radix balthica to Fasciola hepatica through the experimental infection of several successive snail generations
por: Rondelaud, Daniel, et al.
Publicado: (2014)

Maximum thermal tolerance trades off with chronic tolerance of high temperature in contrasting thermal populations of Radix balthica
por: Johansson, Magnus P., et al.
Publicado: (2017)

The Evolutionary Origins of the Southern Ocean Philobryid Bivalves: Hidden Biodiversity, Ancient Persistence
por: Jackson, Jennifer A., et al.
Publicado: (2015)

Genotype by sequencing identifies natural selection as a driver of intraspecific divergence in Atlantic populations of the high dispersal marine invertebrate, Macoma petalum
por: Metivier, Stacy L., et al.
Publicado: (2017)

A High Load of Non-neutral Amino-Acid Polymorphisms Explains High Protein Diversity Despite Moderate Effective Population Size in a Marine Bivalve With Sweepstakes Reproduction
por: Harrang, Estelle, et al.
Publicado: (2013)

De novo transcriptome assembly of Zanthoxylum bungeanum using Illumina sequencing for evolutionary analysis and simple sequence repeat marker development
por: Feng, Shijing, et al.
Publicado: (2017)

Factors and processes shaping the population structure and distribution of genetic variation across the species range of the freshwater snail radix balthica (Pulmonata, Basommatophora)
por: Pfenninger, Markus, et al.
Publicado: (2011)

NABIC SNP: an integrated database for SNP markers
por: Kim, Chang-Kug, et al.
Publicado: (2015)

Evolutionary conservation and divergence of the transcriptional regulation of bivalve shell secretion across life-history stages
por: Cavallo, Alessandro, et al.
Publicado: (2022)

Comparative Genomics Reveals Evolutionary Drivers of Sessile Life and Left-right Shell Asymmetry in Bivalves
por: Zhang, Yang, et al.
Publicado: (2022)

picture of the bivalve prototype
por: Task3 members
Publicado: (07/0)

New Bivalve Speculum
por: Reid, W. L.
Publicado: (1883)

De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu
por: Haynsen, Matthew S., et al.
Publicado: (2018)

Integrated transcriptomic and functional immunological approach for assessing the invasiveness of bivalve alien species
por: Romero, Alejandro, et al.
Publicado: (2019)

Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm
por: Vendramin, Vera, et al.
Publicado: (2019)

Assessment of Toxicity of Monocrotophos in Freshwater Bivalve, Lamellidens marginalis, Using Different Markers
por: Mundhe, Anju Y, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_qr8p2u0it2m3molkqpcd25nnop