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Evolutionary dynamism of the primate LRRC37 gene family
Core duplicons in the human genome represent ancestral duplication modules shared by the majority of intrachromosomal duplication blocks within a given chromosome. These cores are associated with the emergence of novel gene families in the hominoid lineage, but their genomic organization and gene ch...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530683/ https://www.ncbi.nlm.nih.gov/pubmed/23064749 http://dx.doi.org/10.1101/gr.138842.112 |
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author | Giannuzzi, Giuliana Siswara, Priscillia Malig, Maika Marques-Bonet, Tomas Mullikin, James C. Ventura, Mario Eichler, Evan E. |
author_facet | Giannuzzi, Giuliana Siswara, Priscillia Malig, Maika Marques-Bonet, Tomas Mullikin, James C. Ventura, Mario Eichler, Evan E. |
author_sort | Giannuzzi, Giuliana |
collection | PubMed |
description | Core duplicons in the human genome represent ancestral duplication modules shared by the majority of intrachromosomal duplication blocks within a given chromosome. These cores are associated with the emergence of novel gene families in the hominoid lineage, but their genomic organization and gene characterization among other primates are largely unknown. Here, we investigate the genomic organization and expression of the core duplicon on chromosome 17 that led to the expansion of LRRC37 during primate evolution. A comparison of the LRRC37 gene family organization in human, orangutan, macaque, marmoset, and lemur genomes shows the presence of both orthologous and species-specific gene copies in all primate lineages. Expression profiling in mouse, macaque, and human tissues reveals that the ancestral expression of LRRC37 was restricted to the testis. In the hominid lineage, the pattern of LRRC37 became increasingly ubiquitous, with significantly higher levels of expression in the cerebellum and thymus, and showed a remarkable diversity of alternative splice forms. Transfection studies in HeLa cells indicate that the human FLAG-tagged recombinant LRRC37 protein is secreted after cleavage of a transmembrane precursor and its overexpression can induce filipodia formation. |
format | Online Article Text |
id | pubmed-3530683 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Cold Spring Harbor Laboratory Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-35306832013-07-01 Evolutionary dynamism of the primate LRRC37 gene family Giannuzzi, Giuliana Siswara, Priscillia Malig, Maika Marques-Bonet, Tomas Mullikin, James C. Ventura, Mario Eichler, Evan E. Genome Res Research Core duplicons in the human genome represent ancestral duplication modules shared by the majority of intrachromosomal duplication blocks within a given chromosome. These cores are associated with the emergence of novel gene families in the hominoid lineage, but their genomic organization and gene characterization among other primates are largely unknown. Here, we investigate the genomic organization and expression of the core duplicon on chromosome 17 that led to the expansion of LRRC37 during primate evolution. A comparison of the LRRC37 gene family organization in human, orangutan, macaque, marmoset, and lemur genomes shows the presence of both orthologous and species-specific gene copies in all primate lineages. Expression profiling in mouse, macaque, and human tissues reveals that the ancestral expression of LRRC37 was restricted to the testis. In the hominid lineage, the pattern of LRRC37 became increasingly ubiquitous, with significantly higher levels of expression in the cerebellum and thymus, and showed a remarkable diversity of alternative splice forms. Transfection studies in HeLa cells indicate that the human FLAG-tagged recombinant LRRC37 protein is secreted after cleavage of a transmembrane precursor and its overexpression can induce filipodia formation. Cold Spring Harbor Laboratory Press 2013-01 /pmc/articles/PMC3530683/ /pubmed/23064749 http://dx.doi.org/10.1101/gr.138842.112 Text en © 2013, Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/3.0/ This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 3.0 Unported License), as described at http://creativecommons.org/licenses/by-nc/3.0/. |
spellingShingle | Research Giannuzzi, Giuliana Siswara, Priscillia Malig, Maika Marques-Bonet, Tomas Mullikin, James C. Ventura, Mario Eichler, Evan E. Evolutionary dynamism of the primate LRRC37 gene family |
title | Evolutionary dynamism of the primate LRRC37 gene family |
title_full | Evolutionary dynamism of the primate LRRC37 gene family |
title_fullStr | Evolutionary dynamism of the primate LRRC37 gene family |
title_full_unstemmed | Evolutionary dynamism of the primate LRRC37 gene family |
title_short | Evolutionary dynamism of the primate LRRC37 gene family |
title_sort | evolutionary dynamism of the primate lrrc37 gene family |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530683/ https://www.ncbi.nlm.nih.gov/pubmed/23064749 http://dx.doi.org/10.1101/gr.138842.112 |
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