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MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases

MycoProtease-DB is an online MS SQL and CGI-PERL driven relational database that domiciles protease information of Mycobacterium tuberculosis (MTB) complex and Nontuberculous Mycobacteria (NTM), whose complete genome sequence is available. Our effort is to provide comprehensive information on protea...

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Autores principales: Jena, Lingaraja, Kumar, Satish, Harinath, Bhaskar Chinnaiah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530878/
https://www.ncbi.nlm.nih.gov/pubmed/23275726
http://dx.doi.org/10.6026/97320630081240
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author Jena, Lingaraja
Kumar, Satish
Harinath, Bhaskar Chinnaiah
author_facet Jena, Lingaraja
Kumar, Satish
Harinath, Bhaskar Chinnaiah
author_sort Jena, Lingaraja
collection PubMed
description MycoProtease-DB is an online MS SQL and CGI-PERL driven relational database that domiciles protease information of Mycobacterium tuberculosis (MTB) complex and Nontuberculous Mycobacteria (NTM), whose complete genome sequence is available. Our effort is to provide comprehensive information on proteases of 5 strains of Mycobacterium tuberculosis (H(37)Rv, H(37)Ra, CDC1551, F11 and KZN 1435), 3 strains of Mycobacterium bovis (AF2122/97, BCG Pasteur 1173P2 and BCG Tokyo 172) and 4 strains of NTM (Mycobacterium avium 104, Mycobacterium smegmatis MC2 155, Mycobacterium avium paratuberculosis K-10 and Nocardia farcinica IFM 10152) at gene, protein and structural level. MycoProtease-DB currently hosts 1324 proteases, which include 906 proteases from MTB complex with 237distinct proteases & 418 from NTM with 404 distinct proteases. Flexible database design and easy expandability & retrieval of information are the main features of MycoProtease-DB. All the data were validated with various online resources and published literatures for reliable serving as comprehensive resources of various Mycobacterial proteases. AVAILABILITY: The Database is publicly available at http://www.bicjbtdrc-mgims.in/MycoProtease-DB/
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spelling pubmed-35308782012-12-28 MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases Jena, Lingaraja Kumar, Satish Harinath, Bhaskar Chinnaiah Bioinformation Database MycoProtease-DB is an online MS SQL and CGI-PERL driven relational database that domiciles protease information of Mycobacterium tuberculosis (MTB) complex and Nontuberculous Mycobacteria (NTM), whose complete genome sequence is available. Our effort is to provide comprehensive information on proteases of 5 strains of Mycobacterium tuberculosis (H(37)Rv, H(37)Ra, CDC1551, F11 and KZN 1435), 3 strains of Mycobacterium bovis (AF2122/97, BCG Pasteur 1173P2 and BCG Tokyo 172) and 4 strains of NTM (Mycobacterium avium 104, Mycobacterium smegmatis MC2 155, Mycobacterium avium paratuberculosis K-10 and Nocardia farcinica IFM 10152) at gene, protein and structural level. MycoProtease-DB currently hosts 1324 proteases, which include 906 proteases from MTB complex with 237distinct proteases & 418 from NTM with 404 distinct proteases. Flexible database design and easy expandability & retrieval of information are the main features of MycoProtease-DB. All the data were validated with various online resources and published literatures for reliable serving as comprehensive resources of various Mycobacterial proteases. AVAILABILITY: The Database is publicly available at http://www.bicjbtdrc-mgims.in/MycoProtease-DB/ Biomedical Informatics 2012-12-08 /pmc/articles/PMC3530878/ /pubmed/23275726 http://dx.doi.org/10.6026/97320630081240 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Database
Jena, Lingaraja
Kumar, Satish
Harinath, Bhaskar Chinnaiah
MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title_full MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title_fullStr MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title_full_unstemmed MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title_short MycoProtease-DB: Useful resource for Mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
title_sort mycoprotease-db: useful resource for mycobacterium tuberculosis complex and nontuberculous mycobacterial proteases
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530878/
https://www.ncbi.nlm.nih.gov/pubmed/23275726
http://dx.doi.org/10.6026/97320630081240
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