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The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion

ZInC (Zebrafish Insertional Collection, http://research.nhgri.nih.gov/ZInC/) is a web-searchable interface of insertional mutants in zebrafish. Over the last two decades, the zebrafish has become a popular model organism for studying vertebrate development as well as for modeling human diseases. To...

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Autores principales: Varshney, Gaurav K., Huang, Haigen, Zhang, Suiyuan, Lu, Jing, Gildea, Derek E., Yang, Zhongan, Wolfsberg, Tyra G., Lin, Shuo, Burgess, Shawn M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531054/
https://www.ncbi.nlm.nih.gov/pubmed/23180778
http://dx.doi.org/10.1093/nar/gks946
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author Varshney, Gaurav K.
Huang, Haigen
Zhang, Suiyuan
Lu, Jing
Gildea, Derek E.
Yang, Zhongan
Wolfsberg, Tyra G.
Lin, Shuo
Burgess, Shawn M.
author_facet Varshney, Gaurav K.
Huang, Haigen
Zhang, Suiyuan
Lu, Jing
Gildea, Derek E.
Yang, Zhongan
Wolfsberg, Tyra G.
Lin, Shuo
Burgess, Shawn M.
author_sort Varshney, Gaurav K.
collection PubMed
description ZInC (Zebrafish Insertional Collection, http://research.nhgri.nih.gov/ZInC/) is a web-searchable interface of insertional mutants in zebrafish. Over the last two decades, the zebrafish has become a popular model organism for studying vertebrate development as well as for modeling human diseases. To facilitate such studies, we are generating a genome-wide knockout resource that targets every zebrafish protein-coding gene. All mutant fish are freely available to the scientific community through the Zebrafish International Resource Center (ZIRC). To assist researchers in finding mutant and insertion information, we developed a comprehensive database with a web front-end, the ZInC. It can be queried using multiple types of input such as ZFIN (Zebrafish Information Network) IDs, UniGene accession numbers and gene symbols from zebrafish, human and mouse. In the future, ZInC may include data from other insertional mutation projects as well. ZInC cross-references all integration data with the ZFIN (http://zfin.org/).
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spelling pubmed-35310542013-01-03 The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion Varshney, Gaurav K. Huang, Haigen Zhang, Suiyuan Lu, Jing Gildea, Derek E. Yang, Zhongan Wolfsberg, Tyra G. Lin, Shuo Burgess, Shawn M. Nucleic Acids Res Articles ZInC (Zebrafish Insertional Collection, http://research.nhgri.nih.gov/ZInC/) is a web-searchable interface of insertional mutants in zebrafish. Over the last two decades, the zebrafish has become a popular model organism for studying vertebrate development as well as for modeling human diseases. To facilitate such studies, we are generating a genome-wide knockout resource that targets every zebrafish protein-coding gene. All mutant fish are freely available to the scientific community through the Zebrafish International Resource Center (ZIRC). To assist researchers in finding mutant and insertion information, we developed a comprehensive database with a web front-end, the ZInC. It can be queried using multiple types of input such as ZFIN (Zebrafish Information Network) IDs, UniGene accession numbers and gene symbols from zebrafish, human and mouse. In the future, ZInC may include data from other insertional mutation projects as well. ZInC cross-references all integration data with the ZFIN (http://zfin.org/). Oxford University Press 2013-01 2012-11-23 /pmc/articles/PMC3531054/ /pubmed/23180778 http://dx.doi.org/10.1093/nar/gks946 Text en Published by Oxford University Press 2012. http://creativecommons.org/licenses/by/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Varshney, Gaurav K.
Huang, Haigen
Zhang, Suiyuan
Lu, Jing
Gildea, Derek E.
Yang, Zhongan
Wolfsberg, Tyra G.
Lin, Shuo
Burgess, Shawn M.
The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title_full The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title_fullStr The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title_full_unstemmed The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title_short The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion
title_sort zebrafish insertion collection (zinc): a web based, searchable collection of zebrafish mutations generated by dna insertion
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531054/
https://www.ncbi.nlm.nih.gov/pubmed/23180778
http://dx.doi.org/10.1093/nar/gks946
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