Cargando…

The RCSB Protein Data Bank: new resources for research and education

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) develops tools and resources that provide a structural view of biology for research and education. The RCSB PDB web site (http://www.rcsb.org) uses the curated 3D macromolecular data contained in the PDB archive to...

Descripción completa

Detalles Bibliográficos
Autores principales: Rose, Peter W., Bi, Chunxiao, Bluhm, Wolfgang F., Christie, Cole H., Dimitropoulos, Dimitris, Dutta, Shuchismita, Green, Rachel K., Goodsell, David S., Prlić, Andreas, Quesada, Martha, Quinn, Gregory B., Ramos, Alexander G., Westbrook, John D., Young, Jasmine, Zardecki, Christine, Berman, Helen M., Bourne, Philip E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531086/
https://www.ncbi.nlm.nih.gov/pubmed/23193259
http://dx.doi.org/10.1093/nar/gks1200
_version_ 1782254107305705472
author Rose, Peter W.
Bi, Chunxiao
Bluhm, Wolfgang F.
Christie, Cole H.
Dimitropoulos, Dimitris
Dutta, Shuchismita
Green, Rachel K.
Goodsell, David S.
Prlić, Andreas
Quesada, Martha
Quinn, Gregory B.
Ramos, Alexander G.
Westbrook, John D.
Young, Jasmine
Zardecki, Christine
Berman, Helen M.
Bourne, Philip E.
author_facet Rose, Peter W.
Bi, Chunxiao
Bluhm, Wolfgang F.
Christie, Cole H.
Dimitropoulos, Dimitris
Dutta, Shuchismita
Green, Rachel K.
Goodsell, David S.
Prlić, Andreas
Quesada, Martha
Quinn, Gregory B.
Ramos, Alexander G.
Westbrook, John D.
Young, Jasmine
Zardecki, Christine
Berman, Helen M.
Bourne, Philip E.
author_sort Rose, Peter W.
collection PubMed
description The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) develops tools and resources that provide a structural view of biology for research and education. The RCSB PDB web site (http://www.rcsb.org) uses the curated 3D macromolecular data contained in the PDB archive to offer unique methods to access, report and visualize data. Recent activities have focused on improving methods for simple and complex searches of PDB data, creating specialized access to chemical component data and providing domain-based structural alignments. New educational resources are offered at the PDB-101 educational view of the main web site such as Author Profiles that display a researcher’s PDB entries in a timeline. To promote different kinds of access to the RCSB PDB, Web Services have been expanded, and an RCSB PDB Mobile application for the iPhone/iPad has been released. These improvements enable new opportunities for analyzing and understanding structure data.
format Online
Article
Text
id pubmed-3531086
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-35310862013-03-07 The RCSB Protein Data Bank: new resources for research and education Rose, Peter W. Bi, Chunxiao Bluhm, Wolfgang F. Christie, Cole H. Dimitropoulos, Dimitris Dutta, Shuchismita Green, Rachel K. Goodsell, David S. Prlić, Andreas Quesada, Martha Quinn, Gregory B. Ramos, Alexander G. Westbrook, John D. Young, Jasmine Zardecki, Christine Berman, Helen M. Bourne, Philip E. Nucleic Acids Res Articles The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) develops tools and resources that provide a structural view of biology for research and education. The RCSB PDB web site (http://www.rcsb.org) uses the curated 3D macromolecular data contained in the PDB archive to offer unique methods to access, report and visualize data. Recent activities have focused on improving methods for simple and complex searches of PDB data, creating specialized access to chemical component data and providing domain-based structural alignments. New educational resources are offered at the PDB-101 educational view of the main web site such as Author Profiles that display a researcher’s PDB entries in a timeline. To promote different kinds of access to the RCSB PDB, Web Services have been expanded, and an RCSB PDB Mobile application for the iPhone/iPad has been released. These improvements enable new opportunities for analyzing and understanding structure data. Oxford University Press 2013-01 2012-11-26 /pmc/articles/PMC3531086/ /pubmed/23193259 http://dx.doi.org/10.1093/nar/gks1200 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Rose, Peter W.
Bi, Chunxiao
Bluhm, Wolfgang F.
Christie, Cole H.
Dimitropoulos, Dimitris
Dutta, Shuchismita
Green, Rachel K.
Goodsell, David S.
Prlić, Andreas
Quesada, Martha
Quinn, Gregory B.
Ramos, Alexander G.
Westbrook, John D.
Young, Jasmine
Zardecki, Christine
Berman, Helen M.
Bourne, Philip E.
The RCSB Protein Data Bank: new resources for research and education
title The RCSB Protein Data Bank: new resources for research and education
title_full The RCSB Protein Data Bank: new resources for research and education
title_fullStr The RCSB Protein Data Bank: new resources for research and education
title_full_unstemmed The RCSB Protein Data Bank: new resources for research and education
title_short The RCSB Protein Data Bank: new resources for research and education
title_sort rcsb protein data bank: new resources for research and education
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531086/
https://www.ncbi.nlm.nih.gov/pubmed/23193259
http://dx.doi.org/10.1093/nar/gks1200
work_keys_str_mv AT rosepeterw thercsbproteindatabanknewresourcesforresearchandeducation
AT bichunxiao thercsbproteindatabanknewresourcesforresearchandeducation
AT bluhmwolfgangf thercsbproteindatabanknewresourcesforresearchandeducation
AT christiecoleh thercsbproteindatabanknewresourcesforresearchandeducation
AT dimitropoulosdimitris thercsbproteindatabanknewresourcesforresearchandeducation
AT duttashuchismita thercsbproteindatabanknewresourcesforresearchandeducation
AT greenrachelk thercsbproteindatabanknewresourcesforresearchandeducation
AT goodselldavids thercsbproteindatabanknewresourcesforresearchandeducation
AT prlicandreas thercsbproteindatabanknewresourcesforresearchandeducation
AT quesadamartha thercsbproteindatabanknewresourcesforresearchandeducation
AT quinngregoryb thercsbproteindatabanknewresourcesforresearchandeducation
AT ramosalexanderg thercsbproteindatabanknewresourcesforresearchandeducation
AT westbrookjohnd thercsbproteindatabanknewresourcesforresearchandeducation
AT youngjasmine thercsbproteindatabanknewresourcesforresearchandeducation
AT zardeckichristine thercsbproteindatabanknewresourcesforresearchandeducation
AT bermanhelenm thercsbproteindatabanknewresourcesforresearchandeducation
AT bournephilipe thercsbproteindatabanknewresourcesforresearchandeducation
AT rosepeterw rcsbproteindatabanknewresourcesforresearchandeducation
AT bichunxiao rcsbproteindatabanknewresourcesforresearchandeducation
AT bluhmwolfgangf rcsbproteindatabanknewresourcesforresearchandeducation
AT christiecoleh rcsbproteindatabanknewresourcesforresearchandeducation
AT dimitropoulosdimitris rcsbproteindatabanknewresourcesforresearchandeducation
AT duttashuchismita rcsbproteindatabanknewresourcesforresearchandeducation
AT greenrachelk rcsbproteindatabanknewresourcesforresearchandeducation
AT goodselldavids rcsbproteindatabanknewresourcesforresearchandeducation
AT prlicandreas rcsbproteindatabanknewresourcesforresearchandeducation
AT quesadamartha rcsbproteindatabanknewresourcesforresearchandeducation
AT quinngregoryb rcsbproteindatabanknewresourcesforresearchandeducation
AT ramosalexanderg rcsbproteindatabanknewresourcesforresearchandeducation
AT westbrookjohnd rcsbproteindatabanknewresourcesforresearchandeducation
AT youngjasmine rcsbproteindatabanknewresourcesforresearchandeducation
AT zardeckichristine rcsbproteindatabanknewresourcesforresearchandeducation
AT bermanhelenm rcsbproteindatabanknewresourcesforresearchandeducation
AT bournephilipe rcsbproteindatabanknewresourcesforresearchandeducation