Cargando…

APPRIS: annotation of principal and alternative splice isoforms

Here, we present APPRIS (http://appris.bioinfo.cnio.es), a database that houses annotations of human splice isoforms. APPRIS has been designed to provide value to manual annotations of the human genome by adding reliable protein structural and functional data and information from cross-species conse...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rodriguez, Jose Manuel, Maietta, Paolo, Ezkurdia, Iakes, Pietrelli, Alessandro, Wesselink, Jan-Jaap, Lopez, Gonzalo, Valencia, Alfonso, Tress, Michael L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2013
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531113/ https://www.ncbi.nlm.nih.gov/pubmed/23161672 http://dx.doi.org/10.1093/nar/gks1058

Ejemplares similares

APPRIS 2017: principal isoforms for multiple gene sets
por: Rodriguez, Jose Manuel, et al.
Publicado: (2018)

APPRIS principal isoforms and MANE Select transcripts define reference splice variants
por: Pozo, Fernando, et al.
Publicado: (2022)

APPRIS: selecting functionally important isoforms
por: Rodriguez, Jose Manuel, et al.
Publicado: (2021)

APPRIS WebServer and WebServices
por: Rodriguez, Jose Manuel, et al.
Publicado: (2015)

Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function
por: Ezkurdia, Iakes, et al.
Publicado: (2012)

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
por: Abascal, Federico, et al.
Publicado: (2015)

Analyzing the First Drafts of the Human Proteome
por: Ezkurdia, Iakes, et al.
Publicado: (2014)

The potential clinical impact of the release of two drafts of the human proteome
por: Ezkurdia, Iakes, et al.
Publicado: (2015)

Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
por: Ezkurdia, Iakes, et al.
Publicado: (2014)

firestar—advances in the prediction of functionally important residues
por: Lopez, Gonzalo, et al.
Publicado: (2011)

The Evolutionary Fate of Alternatively Spliced Homologous Exons after Gene Duplication
por: Abascal, Federico, et al.
Publicado: (2015)

Proteomics studies confirm the presence of alternative protein isoforms on a large scale
por: Tress, Michael L, et al.
Publicado: (2008)

EcID. A database for the inference of functional interactions in E. coli
por: Andres Leon, Eduardo, et al.
Publicado: (2009)

Inference of Functional Relations in Predicted Protein Networks with a Machine Learning Approach
por: García-Jiménez, Beatriz, et al.
Publicado: (2010)

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals
por: Abascal, Federico, et al.
Publicado: (2015)

Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts
por: Frenkel-Morgenstern, Milana, et al.
Publicado: (2012)

Assessing the functional relevance of splice isoforms
por: Pozo, Fernando, et al.
Publicado: (2021)

FireDB: a compendium of biological and pharmacologically relevant ligands
por: Maietta, Paolo, et al.
Publicado: (2014)

EASI—enrichment of alternatively spliced isoforms
por: Venables, Julian P., et al.
Publicado: (2006)

Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
por: Orabi, Baraa, et al.
Publicado: (2022)

Differential isoform expression and alternative splicing in sex determination in mice
por: Planells, Benjamín, et al.
Publicado: (2019)

ECgene: genome annotation for alternative splicing
por: Kim, Pora, et al.
Publicado: (2005)

Structures of alternatively spliced isoforms of human ketohexokinase
por: Trinh, Chi H., et al.
Publicado: (2009)

Alternative Splicing and Isoforms: From Mechanisms to Diseases
por: Liu, Qi, et al.
Publicado: (2022)

An analysis of tissue-specific alternative splicing at the protein level
por: Rodriguez, Jose Manuel, et al.
Publicado: (2020)

Evolution of the Plasma and Tissue Kallikreins, and Their Alternative Splicing Isoforms
por: Koumandou, Vassiliki Lila, et al.
Publicado: (2013)

Tau Isoforms: Gaining Insight into MAPT Alternative Splicing
por: Corsi, Andrea, et al.
Publicado: (2022)

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice
por: Benegas, Gonzalo, et al.
Publicado: (2022)

COVID-19 et participation des patients à la recherche médicale: qu’avons-nous appris?
por: Denegri, Simon, et al.
Publicado: (2021)

The importance of identifying alternative splicing in vertebrate genome annotation
por: Frankish, Adam, et al.
Publicado: (2012)

Troubles du spectre de l’autisme : ce que nous a appris la pandémie COVID-19
por: Ionescu, Serban, et al.
Publicado: (2022)

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
por: Castrignanò, Tiziana, et al.
Publicado: (2006)

Alternative splicing results in RET isoforms with distinct trafficking properties
por: Richardson, Douglas S., et al.
Publicado: (2012)

Identification of alternatively spliced Dab1 and Fyn isoforms in pig
por: Long, Huan, et al.
Publicado: (2011)

A Novel CDX2 Isoform Regulates Alternative Splicing
por: Witek, Matthew E., et al.
Publicado: (2014)

The dynamic landscape of fission yeast meiosis alternative-splice isoforms
por: Kuang, Zheng, et al.
Publicado: (2017)

Systematic evaluation of isoform function in literature reports of alternative splicing
por: Bhuiyan, Shamsuddin A., et al.
Publicado: (2018)

Isoforms of Base Excision Repair Enzymes Produced by Alternative Splicing
por: Boldinova, Elizaveta O., et al.
Publicado: (2019)

Evasion of regulatory phosphorylation by an alternatively spliced isoform of Musashi2
por: MacNicol, Melanie C., et al.
Publicado: (2017)

Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome
por: Lau, Edward, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_7s27d9bp56v2624lilml3acd4e