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WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp

Here, we present WormQTL (http://www.wormqtl.org), an easily accessible database enabling search, comparative analysis and meta-analysis of all data on variation in Caenorhabditis spp. Over the past decade, Caenorhabditis elegans has become instrumental for molecular quantitative genetics and the sy...

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Autores principales: Snoek, L. Basten, Van der Velde, K. Joeri, Arends, Danny, Li, Yang, Beyer, Antje, Elvin, Mark, Fisher, Jasmin, Hajnal, Alex, Hengartner, Michael O., Poulin, Gino B., Rodriguez, Miriam, Schmid, Tobias, Schrimpf, Sabine, Xue, Feng, Jansen, Ritsert C., Kammenga, Jan E., Swertz, Morris A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531126/
https://www.ncbi.nlm.nih.gov/pubmed/23180786
http://dx.doi.org/10.1093/nar/gks1124
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author Snoek, L. Basten
Van der Velde, K. Joeri
Arends, Danny
Li, Yang
Beyer, Antje
Elvin, Mark
Fisher, Jasmin
Hajnal, Alex
Hengartner, Michael O.
Poulin, Gino B.
Rodriguez, Miriam
Schmid, Tobias
Schrimpf, Sabine
Xue, Feng
Jansen, Ritsert C.
Kammenga, Jan E.
Swertz, Morris A.
author_facet Snoek, L. Basten
Van der Velde, K. Joeri
Arends, Danny
Li, Yang
Beyer, Antje
Elvin, Mark
Fisher, Jasmin
Hajnal, Alex
Hengartner, Michael O.
Poulin, Gino B.
Rodriguez, Miriam
Schmid, Tobias
Schrimpf, Sabine
Xue, Feng
Jansen, Ritsert C.
Kammenga, Jan E.
Swertz, Morris A.
author_sort Snoek, L. Basten
collection PubMed
description Here, we present WormQTL (http://www.wormqtl.org), an easily accessible database enabling search, comparative analysis and meta-analysis of all data on variation in Caenorhabditis spp. Over the past decade, Caenorhabditis elegans has become instrumental for molecular quantitative genetics and the systems biology of natural variation. These efforts have resulted in a valuable amount of phenotypic, high-throughput molecular and genotypic data across different developmental worm stages and environments in hundreds of C. elegans strains. WormQTL provides a workbench of analysis tools for genotype–phenotype linkage and association mapping based on but not limited to R/qtl (http://www.rqtl.org). All data can be uploaded and downloaded using simple delimited text or Excel formats and are accessible via a public web user interface for biologists and R statistic and web service interfaces for bioinformaticians, based on open source MOLGENIS and xQTL workbench software. WormQTL welcomes data submissions from other worm researchers.
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spelling pubmed-35311262013-03-07 WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp Snoek, L. Basten Van der Velde, K. Joeri Arends, Danny Li, Yang Beyer, Antje Elvin, Mark Fisher, Jasmin Hajnal, Alex Hengartner, Michael O. Poulin, Gino B. Rodriguez, Miriam Schmid, Tobias Schrimpf, Sabine Xue, Feng Jansen, Ritsert C. Kammenga, Jan E. Swertz, Morris A. Nucleic Acids Res Articles Here, we present WormQTL (http://www.wormqtl.org), an easily accessible database enabling search, comparative analysis and meta-analysis of all data on variation in Caenorhabditis spp. Over the past decade, Caenorhabditis elegans has become instrumental for molecular quantitative genetics and the systems biology of natural variation. These efforts have resulted in a valuable amount of phenotypic, high-throughput molecular and genotypic data across different developmental worm stages and environments in hundreds of C. elegans strains. WormQTL provides a workbench of analysis tools for genotype–phenotype linkage and association mapping based on but not limited to R/qtl (http://www.rqtl.org). All data can be uploaded and downloaded using simple delimited text or Excel formats and are accessible via a public web user interface for biologists and R statistic and web service interfaces for bioinformaticians, based on open source MOLGENIS and xQTL workbench software. WormQTL welcomes data submissions from other worm researchers. Oxford University Press 2013-01 2012-11-23 /pmc/articles/PMC3531126/ /pubmed/23180786 http://dx.doi.org/10.1093/nar/gks1124 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Snoek, L. Basten
Van der Velde, K. Joeri
Arends, Danny
Li, Yang
Beyer, Antje
Elvin, Mark
Fisher, Jasmin
Hajnal, Alex
Hengartner, Michael O.
Poulin, Gino B.
Rodriguez, Miriam
Schmid, Tobias
Schrimpf, Sabine
Xue, Feng
Jansen, Ritsert C.
Kammenga, Jan E.
Swertz, Morris A.
WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title_full WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title_fullStr WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title_full_unstemmed WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title_short WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
title_sort wormqtl—public archive and analysis web portal for natural variation data in caenorhabditis spp
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531126/
https://www.ncbi.nlm.nih.gov/pubmed/23180786
http://dx.doi.org/10.1093/nar/gks1124
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