metaMicrobesOnline: phylogenomic analysis of microbial communities

The metaMicrobesOnline database (freely available at http://meta.MicrobesOnline.org) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam. Such gene trees allow for rapid homologue analysis and subfa...

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Autores principales: Chivian, Dylan, Dehal, Paramvir S., Keller, Keith, Arkin, Adam P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531168/
https://www.ncbi.nlm.nih.gov/pubmed/23203984
http://dx.doi.org/10.1093/nar/gks1202
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author Chivian, Dylan
Dehal, Paramvir S.
Keller, Keith
Arkin, Adam P.
author_facet Chivian, Dylan
Dehal, Paramvir S.
Keller, Keith
Arkin, Adam P.
author_sort Chivian, Dylan
collection PubMed
description The metaMicrobesOnline database (freely available at http://meta.MicrobesOnline.org) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam. Such gene trees allow for rapid homologue analysis and subfamily comparison of genes from multiple metagenomes and comparisons with genes from microbial isolates. Additionally, the genome browser permits genome context comparisons, which may be used to determine the closest sequenced genome or suggest functionally associated genes. Lastly, the domain browser permits rapid comparison of protein domain organization within genes of interest from metagenomes and complete microbial genomes.
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spelling pubmed-35311682013-01-03 metaMicrobesOnline: phylogenomic analysis of microbial communities Chivian, Dylan Dehal, Paramvir S. Keller, Keith Arkin, Adam P. Nucleic Acids Res Articles The metaMicrobesOnline database (freely available at http://meta.MicrobesOnline.org) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam. Such gene trees allow for rapid homologue analysis and subfamily comparison of genes from multiple metagenomes and comparisons with genes from microbial isolates. Additionally, the genome browser permits genome context comparisons, which may be used to determine the closest sequenced genome or suggest functionally associated genes. Lastly, the domain browser permits rapid comparison of protein domain organization within genes of interest from metagenomes and complete microbial genomes. Oxford University Press 2013-01 2012-11-30 /pmc/articles/PMC3531168/ /pubmed/23203984 http://dx.doi.org/10.1093/nar/gks1202 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Chivian, Dylan
Dehal, Paramvir S.
Keller, Keith
Arkin, Adam P.
metaMicrobesOnline: phylogenomic analysis of microbial communities
title metaMicrobesOnline: phylogenomic analysis of microbial communities
title_full metaMicrobesOnline: phylogenomic analysis of microbial communities
title_fullStr metaMicrobesOnline: phylogenomic analysis of microbial communities
title_full_unstemmed metaMicrobesOnline: phylogenomic analysis of microbial communities
title_short metaMicrobesOnline: phylogenomic analysis of microbial communities
title_sort metamicrobesonline: phylogenomic analysis of microbial communities
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531168/
https://www.ncbi.nlm.nih.gov/pubmed/23203984
http://dx.doi.org/10.1093/nar/gks1202
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