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CircaDB: a database of mammalian circadian gene expression profiles
CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript’s expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531170/ https://www.ncbi.nlm.nih.gov/pubmed/23180795 http://dx.doi.org/10.1093/nar/gks1161 |
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author | Pizarro, Angel Hayer, Katharina Lahens, Nicholas F. Hogenesch, John B. |
author_facet | Pizarro, Angel Hayer, Katharina Lahens, Nicholas F. Hogenesch, John B. |
author_sort | Pizarro, Angel |
collection | PubMed |
description | CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript’s expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations using simple and powerful full text search terms, restrict results to specific data sets and provide probability thresholds for each algorithm. Visualizations of the data are intuitive charts that convey profile information more effectively than a table of probabilities. The CircaDB web application is open source and available at http://github.com/itmat/circadb. |
format | Online Article Text |
id | pubmed-3531170 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-35311702013-03-07 CircaDB: a database of mammalian circadian gene expression profiles Pizarro, Angel Hayer, Katharina Lahens, Nicholas F. Hogenesch, John B. Nucleic Acids Res Articles CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript’s expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations using simple and powerful full text search terms, restrict results to specific data sets and provide probability thresholds for each algorithm. Visualizations of the data are intuitive charts that convey profile information more effectively than a table of probabilities. The CircaDB web application is open source and available at http://github.com/itmat/circadb. Oxford University Press 2013-01 2012-11-23 /pmc/articles/PMC3531170/ /pubmed/23180795 http://dx.doi.org/10.1093/nar/gks1161 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com. |
spellingShingle | Articles Pizarro, Angel Hayer, Katharina Lahens, Nicholas F. Hogenesch, John B. CircaDB: a database of mammalian circadian gene expression profiles |
title | CircaDB: a database of mammalian circadian gene expression profiles |
title_full | CircaDB: a database of mammalian circadian gene expression profiles |
title_fullStr | CircaDB: a database of mammalian circadian gene expression profiles |
title_full_unstemmed | CircaDB: a database of mammalian circadian gene expression profiles |
title_short | CircaDB: a database of mammalian circadian gene expression profiles |
title_sort | circadb: a database of mammalian circadian gene expression profiles |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531170/ https://www.ncbi.nlm.nih.gov/pubmed/23180795 http://dx.doi.org/10.1093/nar/gks1161 |
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