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SchistoDB: an updated genome resource for the three key schistosomes of humans
The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531198/ https://www.ncbi.nlm.nih.gov/pubmed/23161692 http://dx.doi.org/10.1093/nar/gks1087 |
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author | Zerlotini, Adhemar Aguiar, Eric R. G. R. Yu, Fudong Xu, Huayong Li, Yixue Young, Neil D. Gasser, Robin B. Protasio, Anna V. Berriman, Matthew Roos, David S. Kissinger, Jessica C. Oliveira, Guilherme |
author_facet | Zerlotini, Adhemar Aguiar, Eric R. G. R. Yu, Fudong Xu, Huayong Li, Yixue Young, Neil D. Gasser, Robin B. Protasio, Anna V. Berriman, Matthew Roos, David S. Kissinger, Jessica C. Oliveira, Guilherme |
author_sort | Zerlotini, Adhemar |
collection | PubMed |
description | The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides enhanced bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface provided through the Strategies Web Development Kit is available for the mining and visualization of the data. Genomic scale data can be queried based on BLAST searches, annotation keywords and gene ID searches, gene ontology terms, sequence motifs, protein characteristics and phylogenetic relationships. Search strategies can be saved within a user’s profile for future retrieval and may also be shared with other researchers using a unique web address. |
format | Online Article Text |
id | pubmed-3531198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-35311982013-03-07 SchistoDB: an updated genome resource for the three key schistosomes of humans Zerlotini, Adhemar Aguiar, Eric R. G. R. Yu, Fudong Xu, Huayong Li, Yixue Young, Neil D. Gasser, Robin B. Protasio, Anna V. Berriman, Matthew Roos, David S. Kissinger, Jessica C. Oliveira, Guilherme Nucleic Acids Res Articles The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides enhanced bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface provided through the Strategies Web Development Kit is available for the mining and visualization of the data. Genomic scale data can be queried based on BLAST searches, annotation keywords and gene ID searches, gene ontology terms, sequence motifs, protein characteristics and phylogenetic relationships. Search strategies can be saved within a user’s profile for future retrieval and may also be shared with other researchers using a unique web address. Oxford University Press 2013-01 2012-11-17 /pmc/articles/PMC3531198/ /pubmed/23161692 http://dx.doi.org/10.1093/nar/gks1087 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com. |
spellingShingle | Articles Zerlotini, Adhemar Aguiar, Eric R. G. R. Yu, Fudong Xu, Huayong Li, Yixue Young, Neil D. Gasser, Robin B. Protasio, Anna V. Berriman, Matthew Roos, David S. Kissinger, Jessica C. Oliveira, Guilherme SchistoDB: an updated genome resource for the three key schistosomes of humans |
title | SchistoDB: an updated genome resource for the three key schistosomes of humans |
title_full | SchistoDB: an updated genome resource for the three key schistosomes of humans |
title_fullStr | SchistoDB: an updated genome resource for the three key schistosomes of humans |
title_full_unstemmed | SchistoDB: an updated genome resource for the three key schistosomes of humans |
title_short | SchistoDB: an updated genome resource for the three key schistosomes of humans |
title_sort | schistodb: an updated genome resource for the three key schistosomes of humans |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531198/ https://www.ncbi.nlm.nih.gov/pubmed/23161692 http://dx.doi.org/10.1093/nar/gks1087 |
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