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SchistoDB: an updated genome resource for the three key schistosomes of humans

The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides...

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Autores principales: Zerlotini, Adhemar, Aguiar, Eric R. G. R., Yu, Fudong, Xu, Huayong, Li, Yixue, Young, Neil D., Gasser, Robin B., Protasio, Anna V., Berriman, Matthew, Roos, David S., Kissinger, Jessica C., Oliveira, Guilherme
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531198/
https://www.ncbi.nlm.nih.gov/pubmed/23161692
http://dx.doi.org/10.1093/nar/gks1087
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author Zerlotini, Adhemar
Aguiar, Eric R. G. R.
Yu, Fudong
Xu, Huayong
Li, Yixue
Young, Neil D.
Gasser, Robin B.
Protasio, Anna V.
Berriman, Matthew
Roos, David S.
Kissinger, Jessica C.
Oliveira, Guilherme
author_facet Zerlotini, Adhemar
Aguiar, Eric R. G. R.
Yu, Fudong
Xu, Huayong
Li, Yixue
Young, Neil D.
Gasser, Robin B.
Protasio, Anna V.
Berriman, Matthew
Roos, David S.
Kissinger, Jessica C.
Oliveira, Guilherme
author_sort Zerlotini, Adhemar
collection PubMed
description The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides enhanced bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface provided through the Strategies Web Development Kit is available for the mining and visualization of the data. Genomic scale data can be queried based on BLAST searches, annotation keywords and gene ID searches, gene ontology terms, sequence motifs, protein characteristics and phylogenetic relationships. Search strategies can be saved within a user’s profile for future retrieval and may also be shared with other researchers using a unique web address.
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spelling pubmed-35311982013-03-07 SchistoDB: an updated genome resource for the three key schistosomes of humans Zerlotini, Adhemar Aguiar, Eric R. G. R. Yu, Fudong Xu, Huayong Li, Yixue Young, Neil D. Gasser, Robin B. Protasio, Anna V. Berriman, Matthew Roos, David S. Kissinger, Jessica C. Oliveira, Guilherme Nucleic Acids Res Articles The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides enhanced bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface provided through the Strategies Web Development Kit is available for the mining and visualization of the data. Genomic scale data can be queried based on BLAST searches, annotation keywords and gene ID searches, gene ontology terms, sequence motifs, protein characteristics and phylogenetic relationships. Search strategies can be saved within a user’s profile for future retrieval and may also be shared with other researchers using a unique web address. Oxford University Press 2013-01 2012-11-17 /pmc/articles/PMC3531198/ /pubmed/23161692 http://dx.doi.org/10.1093/nar/gks1087 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Zerlotini, Adhemar
Aguiar, Eric R. G. R.
Yu, Fudong
Xu, Huayong
Li, Yixue
Young, Neil D.
Gasser, Robin B.
Protasio, Anna V.
Berriman, Matthew
Roos, David S.
Kissinger, Jessica C.
Oliveira, Guilherme
SchistoDB: an updated genome resource for the three key schistosomes of humans
title SchistoDB: an updated genome resource for the three key schistosomes of humans
title_full SchistoDB: an updated genome resource for the three key schistosomes of humans
title_fullStr SchistoDB: an updated genome resource for the three key schistosomes of humans
title_full_unstemmed SchistoDB: an updated genome resource for the three key schistosomes of humans
title_short SchistoDB: an updated genome resource for the three key schistosomes of humans
title_sort schistodb: an updated genome resource for the three key schistosomes of humans
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531198/
https://www.ncbi.nlm.nih.gov/pubmed/23161692
http://dx.doi.org/10.1093/nar/gks1087
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