dbVar and DGVa: public archives for genomic structural variation

Much has changed in the last two years at DGVa (http://www.ebi.ac.uk/dgva) and dbVar (http://www.ncbi.nlm.nih.gov/dbvar). We are now processing direct submissions rather than only curating data from the literature and our joint study catalog includes data from over 100 studies in 11 organisms. Studi...

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Autores principales: Lappalainen, Ilkka, Lopez, John, Skipper, Lisa, Hefferon, Timothy, Spalding, J. Dylan, Garner, John, Chen, Chao, Maguire, Michael, Corbett, Matt, Zhou, George, Paschall, Justin, Ananiev, Victor, Flicek, Paul, Church, Deanna M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531204/
https://www.ncbi.nlm.nih.gov/pubmed/23193291
http://dx.doi.org/10.1093/nar/gks1213
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author Lappalainen, Ilkka
Lopez, John
Skipper, Lisa
Hefferon, Timothy
Spalding, J. Dylan
Garner, John
Chen, Chao
Maguire, Michael
Corbett, Matt
Zhou, George
Paschall, Justin
Ananiev, Victor
Flicek, Paul
Church, Deanna M.
author_facet Lappalainen, Ilkka
Lopez, John
Skipper, Lisa
Hefferon, Timothy
Spalding, J. Dylan
Garner, John
Chen, Chao
Maguire, Michael
Corbett, Matt
Zhou, George
Paschall, Justin
Ananiev, Victor
Flicek, Paul
Church, Deanna M.
author_sort Lappalainen, Ilkka
collection PubMed
description Much has changed in the last two years at DGVa (http://www.ebi.ac.uk/dgva) and dbVar (http://www.ncbi.nlm.nih.gov/dbvar). We are now processing direct submissions rather than only curating data from the literature and our joint study catalog includes data from over 100 studies in 11 organisms. Studies from human dominate with data from control and case populations, tumor samples as well as three large curated studies derived from multiple sources. During the processing of these data, we have made improvements to our data model, submission process and data representation. Additionally, we have made significant improvements in providing access to these data via web and FTP interfaces.
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spelling pubmed-35312042013-03-07 dbVar and DGVa: public archives for genomic structural variation Lappalainen, Ilkka Lopez, John Skipper, Lisa Hefferon, Timothy Spalding, J. Dylan Garner, John Chen, Chao Maguire, Michael Corbett, Matt Zhou, George Paschall, Justin Ananiev, Victor Flicek, Paul Church, Deanna M. Nucleic Acids Res Articles Much has changed in the last two years at DGVa (http://www.ebi.ac.uk/dgva) and dbVar (http://www.ncbi.nlm.nih.gov/dbvar). We are now processing direct submissions rather than only curating data from the literature and our joint study catalog includes data from over 100 studies in 11 organisms. Studies from human dominate with data from control and case populations, tumor samples as well as three large curated studies derived from multiple sources. During the processing of these data, we have made improvements to our data model, submission process and data representation. Additionally, we have made significant improvements in providing access to these data via web and FTP interfaces. Oxford University Press 2013-01 2012-11-26 /pmc/articles/PMC3531204/ /pubmed/23193291 http://dx.doi.org/10.1093/nar/gks1213 Text en Published by Oxford University Press 2012. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Lappalainen, Ilkka
Lopez, John
Skipper, Lisa
Hefferon, Timothy
Spalding, J. Dylan
Garner, John
Chen, Chao
Maguire, Michael
Corbett, Matt
Zhou, George
Paschall, Justin
Ananiev, Victor
Flicek, Paul
Church, Deanna M.
dbVar and DGVa: public archives for genomic structural variation
title dbVar and DGVa: public archives for genomic structural variation
title_full dbVar and DGVa: public archives for genomic structural variation
title_fullStr dbVar and DGVa: public archives for genomic structural variation
title_full_unstemmed dbVar and DGVa: public archives for genomic structural variation
title_short dbVar and DGVa: public archives for genomic structural variation
title_sort dbvar and dgva: public archives for genomic structural variation
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531204/
https://www.ncbi.nlm.nih.gov/pubmed/23193291
http://dx.doi.org/10.1093/nar/gks1213
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