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FlyBase: improvements to the bibliography

An accurate, comprehensive, non-redundant and up-to-date bibliography is a crucial component of any Model Organism Database (MOD). Principally, the bibliography provides a set of references that are specific to the field served by the MOD. Moreover, it serves as a backbone to which all curated biolo...

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Autores principales: Marygold, Steven J., Leyland, Paul C., Seal, Ruth L., Goodman, Joshua L., Thurmond, Jim, Strelets, Victor B., Wilson, Robert J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531214/
https://www.ncbi.nlm.nih.gov/pubmed/23125371
http://dx.doi.org/10.1093/nar/gks1024
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author Marygold, Steven J.
Leyland, Paul C.
Seal, Ruth L.
Goodman, Joshua L.
Thurmond, Jim
Strelets, Victor B.
Wilson, Robert J.
author_facet Marygold, Steven J.
Leyland, Paul C.
Seal, Ruth L.
Goodman, Joshua L.
Thurmond, Jim
Strelets, Victor B.
Wilson, Robert J.
author_sort Marygold, Steven J.
collection PubMed
description An accurate, comprehensive, non-redundant and up-to-date bibliography is a crucial component of any Model Organism Database (MOD). Principally, the bibliography provides a set of references that are specific to the field served by the MOD. Moreover, it serves as a backbone to which all curated biological data can be attributed. Here, we describe the organization and main features of the bibliography in FlyBase (flybase.org), the MOD for Drosophila melanogaster. We present an overview of the current content of the bibliography, the pipeline for identifying and adding new references, the presentation of data within Reference Reports and effective methods for searching and retrieving bibliographic data. We highlight recent improvements in these areas and describe the advantages of using the FlyBase bibliography over alternative literature resources. Although this article is focused on bibliographic data, many of the features and tools described are applicable to browsing and querying other datasets in FlyBase.
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spelling pubmed-35312142013-03-07 FlyBase: improvements to the bibliography Marygold, Steven J. Leyland, Paul C. Seal, Ruth L. Goodman, Joshua L. Thurmond, Jim Strelets, Victor B. Wilson, Robert J. Nucleic Acids Res Articles An accurate, comprehensive, non-redundant and up-to-date bibliography is a crucial component of any Model Organism Database (MOD). Principally, the bibliography provides a set of references that are specific to the field served by the MOD. Moreover, it serves as a backbone to which all curated biological data can be attributed. Here, we describe the organization and main features of the bibliography in FlyBase (flybase.org), the MOD for Drosophila melanogaster. We present an overview of the current content of the bibliography, the pipeline for identifying and adding new references, the presentation of data within Reference Reports and effective methods for searching and retrieving bibliographic data. We highlight recent improvements in these areas and describe the advantages of using the FlyBase bibliography over alternative literature resources. Although this article is focused on bibliographic data, many of the features and tools described are applicable to browsing and querying other datasets in FlyBase. Oxford University Press 2013-01 2012-11-02 /pmc/articles/PMC3531214/ /pubmed/23125371 http://dx.doi.org/10.1093/nar/gks1024 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Articles
Marygold, Steven J.
Leyland, Paul C.
Seal, Ruth L.
Goodman, Joshua L.
Thurmond, Jim
Strelets, Victor B.
Wilson, Robert J.
FlyBase: improvements to the bibliography
title FlyBase: improvements to the bibliography
title_full FlyBase: improvements to the bibliography
title_fullStr FlyBase: improvements to the bibliography
title_full_unstemmed FlyBase: improvements to the bibliography
title_short FlyBase: improvements to the bibliography
title_sort flybase: improvements to the bibliography
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531214/
https://www.ncbi.nlm.nih.gov/pubmed/23125371
http://dx.doi.org/10.1093/nar/gks1024
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