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Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid
Lombok Strait has abundance of Sardine, Sardinella lemuru, which contains such high amount of omega-3 fatty acid (omega-3). However, the genetic relationship of S. lemuru with other commercial fish rich in omega-3 has not been widely studied yet. Studies on genetic proximity of S. lemuru with the ot...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532013/ https://www.ncbi.nlm.nih.gov/pubmed/23275733 http://dx.doi.org/10.6026/97320630081271 |
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author | Mahrus, Sumitro, Sutiman Bambang Utomo, Didik Huswo Sartimbul, Aida Toha, Abdul Hamid Widodo, Nashi |
author_facet | Mahrus, Sumitro, Sutiman Bambang Utomo, Didik Huswo Sartimbul, Aida Toha, Abdul Hamid Widodo, Nashi |
author_sort | Mahrus, |
collection | PubMed |
description | Lombok Strait has abundance of Sardine, Sardinella lemuru, which contains such high amount of omega-3 fatty acid (omega-3). However, the genetic relationship of S. lemuru with other commercial fish rich in omega-3 has not been widely studied yet. Studies on genetic proximity of S. lemuru with the other marine fish using 12S rRNA gene is very important in order to obtain genetic information of the Sardine to develop an appropriate strategy for future conservation of the fish in Lombok Strait. The aim of this study was to find out the genetic relationship of Sardinella lemuru living in Lombok Strait with the economically valuable fish and its correlation with omega-3 production. Sardinella lemuru were collected from Lombok Strait, the phylogenetic tree was done based on 12S rRNA gene through a neighbor-joining method to identify the relationship of Sardines and fish rich in omega-3 fatty acid. The phylogenetic tree showed that Sardinella lemuru is similar to Sardinella aurita and has a close similarity with Sardinella maderensis. However, the relationship did not correspond to omega-3 production. Based on the results of the study, it is suggested that the production of omega-3 is not specifically based on the proximity of the species, but it is more associated with conserved domain of Δ6-desaturase. Nevertheless, detailed mechanisms still need to be elucidated. |
format | Online Article Text |
id | pubmed-3532013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-35320132012-12-28 Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid Mahrus, Sumitro, Sutiman Bambang Utomo, Didik Huswo Sartimbul, Aida Toha, Abdul Hamid Widodo, Nashi Bioinformation Hypothesis Lombok Strait has abundance of Sardine, Sardinella lemuru, which contains such high amount of omega-3 fatty acid (omega-3). However, the genetic relationship of S. lemuru with other commercial fish rich in omega-3 has not been widely studied yet. Studies on genetic proximity of S. lemuru with the other marine fish using 12S rRNA gene is very important in order to obtain genetic information of the Sardine to develop an appropriate strategy for future conservation of the fish in Lombok Strait. The aim of this study was to find out the genetic relationship of Sardinella lemuru living in Lombok Strait with the economically valuable fish and its correlation with omega-3 production. Sardinella lemuru were collected from Lombok Strait, the phylogenetic tree was done based on 12S rRNA gene through a neighbor-joining method to identify the relationship of Sardines and fish rich in omega-3 fatty acid. The phylogenetic tree showed that Sardinella lemuru is similar to Sardinella aurita and has a close similarity with Sardinella maderensis. However, the relationship did not correspond to omega-3 production. Based on the results of the study, it is suggested that the production of omega-3 is not specifically based on the proximity of the species, but it is more associated with conserved domain of Δ6-desaturase. Nevertheless, detailed mechanisms still need to be elucidated. Biomedical Informatics 2012-12-19 /pmc/articles/PMC3532013/ /pubmed/23275733 http://dx.doi.org/10.6026/97320630081271 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Hypothesis Mahrus, Sumitro, Sutiman Bambang Utomo, Didik Huswo Sartimbul, Aida Toha, Abdul Hamid Widodo, Nashi Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title | Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title_full | Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title_fullStr | Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title_full_unstemmed | Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title_short | Genetic relationship of Sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
title_sort | genetic relationship of sardinella lemuru from lombok strait with fish rich in omega-3 fatty acid |
topic | Hypothesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532013/ https://www.ncbi.nlm.nih.gov/pubmed/23275733 http://dx.doi.org/10.6026/97320630081271 |
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