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Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes

BACKGROUND: Technological leaps in genome sequencing have resulted in a surge in discovery of human disease genes. These discoveries have led to increased clarity on the molecular pathology of disease and have also demonstrated considerable overlap in the genetic roots of human diseases. In light of...

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Autores principales: Duda, Marlena, Nelson, Tristan, Wall, Dennis P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532152/
https://www.ncbi.nlm.nih.gov/pubmed/23190421
http://dx.doi.org/10.1186/1471-2350-13-114
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author Duda, Marlena
Nelson, Tristan
Wall, Dennis P
author_facet Duda, Marlena
Nelson, Tristan
Wall, Dennis P
author_sort Duda, Marlena
collection PubMed
description BACKGROUND: Technological leaps in genome sequencing have resulted in a surge in discovery of human disease genes. These discoveries have led to increased clarity on the molecular pathology of disease and have also demonstrated considerable overlap in the genetic roots of human diseases. In light of this large genetic overlap, we tested whether cross-disease research approaches lead to faster, more impactful discoveries. METHODS: We leveraged several gene-disease association databases to calculate a Mutual Citation Score (MCS) for 10,853 pairs of genetically related diseases to measure the frequency of cross-citation between research fields. To assess the importance of cooperative research, we computed an Individual Disease Cooperation Score (ICS) and the average publication rate for each disease. RESULTS: For all disease pairs with one gene in common, we found that the degree of genetic overlap was a poor predictor of cooperation (r(2)=0.3198) and that the vast majority of disease pairs (89.56%) never cited previous discoveries of the same gene in a different disease, irrespective of the level of genetic similarity between the diseases. A fraction (0.25%) of the pairs demonstrated cross-citation in greater than 5% of their published genetic discoveries and 0.037% cross-referenced discoveries more than 10% of the time. We found strong positive correlations between ICS and publication rate (r(2)=0.7931), and an even stronger correlation between the publication rate and the number of cross-referenced diseases (r(2)=0.8585). These results suggested that cross-disease research may have the potential to yield novel discoveries at a faster pace than singular disease research. CONCLUSIONS: Our findings suggest that the frequency of cross-disease study is low despite the high level of genetic similarity among many human diseases, and that collaborative methods may accelerate and increase the impact of new genetic discoveries. Until we have a better understanding of the taxonomy of human diseases, cross-disease research approaches should become the rule rather than the exception.
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spelling pubmed-35321522013-01-03 Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes Duda, Marlena Nelson, Tristan Wall, Dennis P BMC Med Genet Research Article BACKGROUND: Technological leaps in genome sequencing have resulted in a surge in discovery of human disease genes. These discoveries have led to increased clarity on the molecular pathology of disease and have also demonstrated considerable overlap in the genetic roots of human diseases. In light of this large genetic overlap, we tested whether cross-disease research approaches lead to faster, more impactful discoveries. METHODS: We leveraged several gene-disease association databases to calculate a Mutual Citation Score (MCS) for 10,853 pairs of genetically related diseases to measure the frequency of cross-citation between research fields. To assess the importance of cooperative research, we computed an Individual Disease Cooperation Score (ICS) and the average publication rate for each disease. RESULTS: For all disease pairs with one gene in common, we found that the degree of genetic overlap was a poor predictor of cooperation (r(2)=0.3198) and that the vast majority of disease pairs (89.56%) never cited previous discoveries of the same gene in a different disease, irrespective of the level of genetic similarity between the diseases. A fraction (0.25%) of the pairs demonstrated cross-citation in greater than 5% of their published genetic discoveries and 0.037% cross-referenced discoveries more than 10% of the time. We found strong positive correlations between ICS and publication rate (r(2)=0.7931), and an even stronger correlation between the publication rate and the number of cross-referenced diseases (r(2)=0.8585). These results suggested that cross-disease research may have the potential to yield novel discoveries at a faster pace than singular disease research. CONCLUSIONS: Our findings suggest that the frequency of cross-disease study is low despite the high level of genetic similarity among many human diseases, and that collaborative methods may accelerate and increase the impact of new genetic discoveries. Until we have a better understanding of the taxonomy of human diseases, cross-disease research approaches should become the rule rather than the exception. BioMed Central 2012-11-28 /pmc/articles/PMC3532152/ /pubmed/23190421 http://dx.doi.org/10.1186/1471-2350-13-114 Text en Copyright ©2012 Duda et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Duda, Marlena
Nelson, Tristan
Wall, Dennis P
Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title_full Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title_fullStr Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title_full_unstemmed Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title_short Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
title_sort cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532152/
https://www.ncbi.nlm.nih.gov/pubmed/23190421
http://dx.doi.org/10.1186/1471-2350-13-114
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