Cargando…

Transcriptome walking: a laboratory-oriented GUI-based approach to mRNA identification from deep-sequenced data

BACKGROUND: Deep sequencing technology provides efficient and economical production of large numbers of randomly positioned, relatively short, estimates of base identities in DNA molecules. Application of this technology to mRNA samples allows rapid examination of the molecular genetic environment i...

Descripción completa

Detalles Bibliográficos
Autor principal:	French, Andrew S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Technical Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538525/ https://www.ncbi.nlm.nih.gov/pubmed/23217191 http://dx.doi.org/10.1186/1756-0500-5-673

Ejemplares similares

AUDocker LE: A GUI for virtual screening with AUTODOCK Vina
por: Sandeep, Gaddam, et al.
Publicado: (2011)

An enhanced method for sequence walking and paralog mining: TOPO(® )Vector-Ligation PCR
por: Orcheski, Benjamin B, et al.
Publicado: (2010)

The successful implementation of a licensed data management interface between a Sunquest(®) laboratory information system and an AB SCIEX™ mass spectrometer
por: French, Deborah, et al.
Publicado: (2013)

Deviation of the orientation angle of directional deep brain stimulation leads quantified by intraoperative stereotactic X-ray imaging
por: Schmidt, Josephiene M., et al.
Publicado: (2022)

Validation of miRNA-mRNA interactions by electrophoretic mobility shift assays
por: Solé, Anna, et al.
Publicado: (2013)

SV-AUC as a stability-indicating method for the characterization of mRNA-LNPs
por: Thaller, Anian, et al.
Publicado: (2023)

Monitoring mRNA Half-Life in Arabidopsis Using Droplet Digital PCR
por: Boubegtitene, Alexandre, et al.
Publicado: (2022)

ANDES: Statistical tools for the ANalyses of DEep Sequencing
por: Li, Kelvin, et al.
Publicado: (2010)

Implementation of Cloud based Next Generation Sequencing data analysis in a clinical laboratory
por: Onsongo, Getiria, et al.
Publicado: (2014)

VING: a software for visualization of deep sequencing signals
por: Descrimes, Marc, et al.
Publicado: (2015)

De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences
por: Maudhoo, Mnirnal D, et al.
Publicado: (2014)

Variability in mRNA expression of fms-like tyrosine kinase-1 variants in normal and preeclamptic placenta
por: Surmon, Laura, et al.
Publicado: (2014)

Stepwise approach to establishing multiple outreach laboratory information system-electronic medical record interfaces
por: Pantanowitz, Liron, et al.
Publicado: (2010)

GenomeGems: evaluation of genetic variability from deep sequencing data
por: Ben-Zvi, Sharon, et al.
Publicado: (2012)

RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis
por: Chow, Keng-See, et al.
Publicado: (2014)

Pincho: A Modular Approach to High Quality De Novo Transcriptomics
por: Ortiz, Randy, et al.
Publicado: (2021)

DeePVP: Identification and classification of phage virion proteins using deep learning
por: Fang, Zhencheng, et al.
Publicado: (2022)

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example
por: Rauwerda, Han, et al.
Publicado: (2010)

A Deep Learning Approach to Skin Cancer Detection in Dermoscopy Images
por: A., Ameri
Publicado: (2020)

Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection
por: Yu, Qichao, et al.
Publicado: (2017)

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
por: Teng, Haotian, et al.
Publicado: (2018)

Methods for siRNA-mediated Reduction of mRNA and Protein Expression in Human Placental Explants, Isolated Primary Cells and Cell Lines
por: Forbes, K., et al.
Publicado: (2009)

What the Phage: a scalable workflow for the identification and analysis of phage sequences
por: Marquet, Mike, et al.
Publicado: (2022)

A deep learning approach for fully automated cardiac shape modeling in tetralogy of Fallot
por: Govil, Sachin, et al.
Publicado: (2023)

poRe GUIs for parallel and real-time processing of MinION sequence data
por: Stewart, Robert D, et al.
Publicado: (2017)

An algorithm for score aggregation over causal biological networks based on random walk sampling
por: Vasilyev, Dmitry M, et al.
Publicado: (2014)

Experience of maintaining laboratory educational website's sustainability
por: Dimenstein, Izak B.
Publicado: (2016)

A Sufficient Surgical Window for Deep-Seated Extracranial Schwannomas in the Craniocervical Junction by the Anterolateral Approach
por: Ohnishi, Yu-ichiro, et al.
Publicado: (2020)

Effect of Three-Dimensional Detector Orientation on Small-Field Output Factors
por: Msimang, Zakithi Lungile Mpumelelo, et al.
Publicado: (2020)

A comparative study of digital PCR and real-time qPCR for the detection and quantification of HPV mRNA in sentinel lymph nodes of cervical cancer patients
por: Carow, Katrin, et al.
Publicado: (2017)

Clinical-Scale Production of CAR-T Cells for the Treatment of Melanoma Patients by mRNA Transfection of a CSPG4-Specific CAR under Full GMP Compliance
por: Wiesinger, Manuel, et al.
Publicado: (2019)

ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
por: Khiabanian, Hossein, et al.
Publicado: (2010)

DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data
por: Simon, Lukas M, et al.
Publicado: (2020)

Nephila edulis—breeding and care under laboratory conditions
por: Liebsch, C., et al.
Publicado: (2020)

SCHOOL: Software for Clinical Health in Oncology for Omics Laboratories
por: Raulerson, Chelsea K., et al.
Publicado: (2022)

DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data
por: Hollunder, Jens, et al.
Publicado: (2010)

pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis
por: Pellet, Johann, et al.
Publicado: (2009)

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success
por: Humble, Emily, et al.
Publicado: (2016)

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis
por: Chen, Yun-Ching, et al.
Publicado: (2019)

The untapped potential of physical activity monitoring for quality assurance of field-based walking tests in clinical respiratory trials
por: Orme, Mark W, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_d4tdcsp4rkai9ag3sqk0iklp3n