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A Neural Network Model to Translate Brain Developmental Events across Mammalian Species

Translating the timing of brain developmental events across mammalian species using suitable models has provided unprecedented insights into neural development and evolution. More importantly, these models can prove to be useful abstractions and predict unknown events across species from known empir...

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Detalles Bibliográficos
Autores principales: Nagarajan, Radhakrishnan, Jonkman, Jeffrey N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538787/
https://www.ncbi.nlm.nih.gov/pubmed/23308165
http://dx.doi.org/10.1371/journal.pone.0053225
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author Nagarajan, Radhakrishnan
Jonkman, Jeffrey N.
author_facet Nagarajan, Radhakrishnan
Jonkman, Jeffrey N.
author_sort Nagarajan, Radhakrishnan
collection PubMed
description Translating the timing of brain developmental events across mammalian species using suitable models has provided unprecedented insights into neural development and evolution. More importantly, these models can prove to be useful abstractions and predict unknown events across species from known empirical event timing data retrieved from published literature. Such predictions can be especially useful since the distribution of the event timing data is skewed with a majority of events documented only across a few selected species. The present study investigates the choice of single hidden layer feed-forward neural networks (FFNN) for predicting the unknown events from the empirical data. A leave-one-out cross-validation approach is used to determine the optimal number of units in the hidden layer and the decay parameter for the FFNN. It is shown that unlike the present Finlay-Darlington (FD) model, FFNN does not impose any constraints on the functional form of the model and falls under the class of semiparametric regression models that can approximate any continuous function. The results from FFNN as well as FD model also indicate that a majority of events with large absolute prediction errors correspond to those of primates and late events comprising the tail of event timing data distribution with minimal representation in the empirical data. These results also indicate that accurate prediction of primate events may be challenging.
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spelling pubmed-35387872013-01-10 A Neural Network Model to Translate Brain Developmental Events across Mammalian Species Nagarajan, Radhakrishnan Jonkman, Jeffrey N. PLoS One Research Article Translating the timing of brain developmental events across mammalian species using suitable models has provided unprecedented insights into neural development and evolution. More importantly, these models can prove to be useful abstractions and predict unknown events across species from known empirical event timing data retrieved from published literature. Such predictions can be especially useful since the distribution of the event timing data is skewed with a majority of events documented only across a few selected species. The present study investigates the choice of single hidden layer feed-forward neural networks (FFNN) for predicting the unknown events from the empirical data. A leave-one-out cross-validation approach is used to determine the optimal number of units in the hidden layer and the decay parameter for the FFNN. It is shown that unlike the present Finlay-Darlington (FD) model, FFNN does not impose any constraints on the functional form of the model and falls under the class of semiparametric regression models that can approximate any continuous function. The results from FFNN as well as FD model also indicate that a majority of events with large absolute prediction errors correspond to those of primates and late events comprising the tail of event timing data distribution with minimal representation in the empirical data. These results also indicate that accurate prediction of primate events may be challenging. Public Library of Science 2013-01-07 /pmc/articles/PMC3538787/ /pubmed/23308165 http://dx.doi.org/10.1371/journal.pone.0053225 Text en © 2013 Nagarajan and Jonkman http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Nagarajan, Radhakrishnan
Jonkman, Jeffrey N.
A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title_full A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title_fullStr A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title_full_unstemmed A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title_short A Neural Network Model to Translate Brain Developmental Events across Mammalian Species
title_sort neural network model to translate brain developmental events across mammalian species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538787/
https://www.ncbi.nlm.nih.gov/pubmed/23308165
http://dx.doi.org/10.1371/journal.pone.0053225
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