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Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540420/ https://www.ncbi.nlm.nih.gov/pubmed/23303300 http://dx.doi.org/10.1093/database/bas057 |
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author | Bertone, Matthew A. Mikó, István Yoder, Matthew J. Seltmann, Katja C. Balhoff, James P. Deans, Andrew R. |
author_facet | Bertone, Matthew A. Mikó, István Yoder, Matthew J. Seltmann, Katja C. Balhoff, James P. Deans, Andrew R. |
author_sort | Bertone, Matthew A. |
collection | PubMed |
description | Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group’s anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process. Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.obo |
format | Online Article Text |
id | pubmed-3540420 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-35404202013-01-09 Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment Bertone, Matthew A. Mikó, István Yoder, Matthew J. Seltmann, Katja C. Balhoff, James P. Deans, Andrew R. Database (Oxford) Original Article Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group’s anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process. Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.obo Oxford University Press 2013-01-09 /pmc/articles/PMC3540420/ /pubmed/23303300 http://dx.doi.org/10.1093/database/bas057 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Bertone, Matthew A. Mikó, István Yoder, Matthew J. Seltmann, Katja C. Balhoff, James P. Deans, Andrew R. Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title | Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title_full | Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title_fullStr | Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title_full_unstemmed | Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title_short | Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment |
title_sort | matching arthropod anatomy ontologies to the hymenoptera anatomy ontology: results from a manual alignment |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540420/ https://www.ncbi.nlm.nih.gov/pubmed/23303300 http://dx.doi.org/10.1093/database/bas057 |
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