Cargando…

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, t...

Descripción completa

Detalles Bibliográficos
Autores principales: Bertone, Matthew A., Mikó, István, Yoder, Matthew J., Seltmann, Katja C., Balhoff, James P., Deans, Andrew R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540420/
https://www.ncbi.nlm.nih.gov/pubmed/23303300
http://dx.doi.org/10.1093/database/bas057
_version_ 1782255232809435136
author Bertone, Matthew A.
Mikó, István
Yoder, Matthew J.
Seltmann, Katja C.
Balhoff, James P.
Deans, Andrew R.
author_facet Bertone, Matthew A.
Mikó, István
Yoder, Matthew J.
Seltmann, Katja C.
Balhoff, James P.
Deans, Andrew R.
author_sort Bertone, Matthew A.
collection PubMed
description Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group’s anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process. Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.obo
format Online
Article
Text
id pubmed-3540420
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-35404202013-01-09 Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment Bertone, Matthew A. Mikó, István Yoder, Matthew J. Seltmann, Katja C. Balhoff, James P. Deans, Andrew R. Database (Oxford) Original Article Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group’s anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process. Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.obo Oxford University Press 2013-01-09 /pmc/articles/PMC3540420/ /pubmed/23303300 http://dx.doi.org/10.1093/database/bas057 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Bertone, Matthew A.
Mikó, István
Yoder, Matthew J.
Seltmann, Katja C.
Balhoff, James P.
Deans, Andrew R.
Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title_full Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title_fullStr Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title_full_unstemmed Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title_short Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment
title_sort matching arthropod anatomy ontologies to the hymenoptera anatomy ontology: results from a manual alignment
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540420/
https://www.ncbi.nlm.nih.gov/pubmed/23303300
http://dx.doi.org/10.1093/database/bas057
work_keys_str_mv AT bertonematthewa matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment
AT mikoistvan matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment
AT yodermatthewj matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment
AT seltmannkatjac matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment
AT balhoffjamesp matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment
AT deansandrewr matchingarthropodanatomyontologiestothehymenopteraanatomyontologyresultsfromamanualalignment