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Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining

Oxidative stress, which results in an excessive product of reactive oxygen species (ROS), is one of the fundamental mechanisms of the development of hypertension. In the vascular system, ROS have physical and pathophysiological roles in vascular remodeling and endothelial dysfunction. In this study,...

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Detalles Bibliográficos
Autores principales: Lim, Ji Eun, Hong, Kyung-Won, Jin, Hyun-Seok, Oh, Bermseok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543925/
https://www.ncbi.nlm.nih.gov/pubmed/23346037
http://dx.doi.org/10.5808/GI.2012.10.4.244
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author Lim, Ji Eun
Hong, Kyung-Won
Jin, Hyun-Seok
Oh, Bermseok
author_facet Lim, Ji Eun
Hong, Kyung-Won
Jin, Hyun-Seok
Oh, Bermseok
author_sort Lim, Ji Eun
collection PubMed
description Oxidative stress, which results in an excessive product of reactive oxygen species (ROS), is one of the fundamental mechanisms of the development of hypertension. In the vascular system, ROS have physical and pathophysiological roles in vascular remodeling and endothelial dysfunction. In this study, ROS-hypertension-related genes were collected by the biological literature-mining tools, such as SciMiner and gene2pubmed, in order to identify the genes that would cause hypertension through ROS. Further, single nucleotide polymorphisms (SNPs) located within these gene regions were examined statistically for their association with hypertension in 6,419 Korean individuals, and pathway enrichment analysis using the associated genes was performed. The 2,945 SNPs of 237 ROS-hypertension genes were analyzed, and 68 genes were significantly associated with hypertension (p < 0.05). The most significant SNP was rs2889611 within MAPK8 (p = 2.70 × 10(-5); odds ratio, 0.82; confidence interval, 0.75 to 0.90). This study demonstrates that a text mining approach combined with association analysis may be useful to identify the candidate genes that cause hypertension through ROS or oxidative stress.
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spelling pubmed-35439252013-01-23 Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining Lim, Ji Eun Hong, Kyung-Won Jin, Hyun-Seok Oh, Bermseok Genomics Inform Original Article Oxidative stress, which results in an excessive product of reactive oxygen species (ROS), is one of the fundamental mechanisms of the development of hypertension. In the vascular system, ROS have physical and pathophysiological roles in vascular remodeling and endothelial dysfunction. In this study, ROS-hypertension-related genes were collected by the biological literature-mining tools, such as SciMiner and gene2pubmed, in order to identify the genes that would cause hypertension through ROS. Further, single nucleotide polymorphisms (SNPs) located within these gene regions were examined statistically for their association with hypertension in 6,419 Korean individuals, and pathway enrichment analysis using the associated genes was performed. The 2,945 SNPs of 237 ROS-hypertension genes were analyzed, and 68 genes were significantly associated with hypertension (p < 0.05). The most significant SNP was rs2889611 within MAPK8 (p = 2.70 × 10(-5); odds ratio, 0.82; confidence interval, 0.75 to 0.90). This study demonstrates that a text mining approach combined with association analysis may be useful to identify the candidate genes that cause hypertension through ROS or oxidative stress. Korea Genome Organization 2012-12 2012-12-31 /pmc/articles/PMC3543925/ /pubmed/23346037 http://dx.doi.org/10.5808/GI.2012.10.4.244 Text en Copyright © 2012 by The Korea Genome Organization http://creativecommons.org/licenses/by-nc/3.0/ It is identical to the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/).
spellingShingle Original Article
Lim, Ji Eun
Hong, Kyung-Won
Jin, Hyun-Seok
Oh, Bermseok
Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title_full Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title_fullStr Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title_full_unstemmed Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title_short Association Analysis of Reactive Oxygen Species-Hypertension Genes Discovered by Literature Mining
title_sort association analysis of reactive oxygen species-hypertension genes discovered by literature mining
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543925/
https://www.ncbi.nlm.nih.gov/pubmed/23346037
http://dx.doi.org/10.5808/GI.2012.10.4.244
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