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QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and o...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korea Genome Organization
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543928/ https://www.ncbi.nlm.nih.gov/pubmed/23346040 http://dx.doi.org/10.5808/GI.2012.10.4.263 |
_version_ | 1782255721438511104 |
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author | Kim, Nayoung Park, Herin He, Ningning Lee, Hyeon Young Yoon, Sukjoon |
author_facet | Kim, Nayoung Park, Herin He, Ningning Lee, Hyeon Young Yoon, Sukjoon |
author_sort | Kim, Nayoung |
collection | PubMed |
description | We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics. |
format | Online Article Text |
id | pubmed-3543928 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Korea Genome Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-35439282013-01-23 QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data Kim, Nayoung Park, Herin He, Ningning Lee, Hyeon Young Yoon, Sukjoon Genomics Inform Application Note We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics. Korea Genome Organization 2012-12 2012-12-31 /pmc/articles/PMC3543928/ /pubmed/23346040 http://dx.doi.org/10.5808/GI.2012.10.4.263 Text en Copyright © 2012 by The Korea Genome Organization http://creativecommons.org/licenses/by-nc/3.0/ It is identical to the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/). |
spellingShingle | Application Note Kim, Nayoung Park, Herin He, Ningning Lee, Hyeon Young Yoon, Sukjoon QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title_full | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title_fullStr | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title_full_unstemmed | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title_short | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
title_sort | qcanvas: an advanced tool for data clustering and visualization of genomics data |
topic | Application Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543928/ https://www.ncbi.nlm.nih.gov/pubmed/23346040 http://dx.doi.org/10.5808/GI.2012.10.4.263 |
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