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QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data

We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and o...

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Detalles Bibliográficos
Autores principales: Kim, Nayoung, Park, Herin, He, Ningning, Lee, Hyeon Young, Yoon, Sukjoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543928/
https://www.ncbi.nlm.nih.gov/pubmed/23346040
http://dx.doi.org/10.5808/GI.2012.10.4.263
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author Kim, Nayoung
Park, Herin
He, Ningning
Lee, Hyeon Young
Yoon, Sukjoon
author_facet Kim, Nayoung
Park, Herin
He, Ningning
Lee, Hyeon Young
Yoon, Sukjoon
author_sort Kim, Nayoung
collection PubMed
description We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics.
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spelling pubmed-35439282013-01-23 QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data Kim, Nayoung Park, Herin He, Ningning Lee, Hyeon Young Yoon, Sukjoon Genomics Inform Application Note We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics. Korea Genome Organization 2012-12 2012-12-31 /pmc/articles/PMC3543928/ /pubmed/23346040 http://dx.doi.org/10.5808/GI.2012.10.4.263 Text en Copyright © 2012 by The Korea Genome Organization http://creativecommons.org/licenses/by-nc/3.0/ It is identical to the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/).
spellingShingle Application Note
Kim, Nayoung
Park, Herin
He, Ningning
Lee, Hyeon Young
Yoon, Sukjoon
QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title_full QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title_fullStr QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title_full_unstemmed QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title_short QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
title_sort qcanvas: an advanced tool for data clustering and visualization of genomics data
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543928/
https://www.ncbi.nlm.nih.gov/pubmed/23346040
http://dx.doi.org/10.5808/GI.2012.10.4.263
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