Cargando…

The prediction of the porcine pre-microRNAs in genome-wide based on support vector machine (SVM) and homology searching

BACKGROUND: MicroRNAs (miRNAs) are a class of small non-coding RNAs that regulate gene expression by targeting mRNAs for translation repression or mRNA degradation. Although many miRNAs have been discovered and studied in human and mouse, few studies focused on porcine miRNAs, especially in genome w...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Zhen, He, Kan, Wang, Qishan, Yang, Yumei, Pan, Yuchun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3545972/ https://www.ncbi.nlm.nih.gov/pubmed/23268561 http://dx.doi.org/10.1186/1471-2164-13-729

Ejemplares similares

CompareSVM: supervised, Support Vector Machine (SVM) inference of gene regularity networks
por: Gillani, Zeeshan, et al.
Publicado: (2014)

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine
por: Sun, Lei, et al.
Publicado: (2015)

LipoSVM: Prediction of Lysine Lipoylation in Proteins based on the Support Vector Machine
por: Wu, Meiqi, et al.
Publicado: (2019)

Data on Support Vector Machines (SVM) model to forecast photovoltaic power
por: Malvoni, M., et al.
Publicado: (2016)

A Comparative Study of Mouse Hepatic and Intestinal Gene Expression Profiles under PPARα Knockout by Gene Set Enrichment Analysis
por: He, Kan, et al.
Publicado: (2011)

Applications of Support Vector Machine in Genomic Prediction in Pig and Maize Populations
por: Zhao, Wei, et al.
Publicado: (2020)

A comparative genome analysis of gene expression reveals different regulatory mechanisms between mouse and human embryo pre-implantation development
por: He, Kan, et al.
Publicado: (2010)

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine
por: Meng, Jun, et al.
Publicado: (2014)

Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
por: Zhang, Chaoyang, et al.
Publicado: (2006)

Quality assessment of tandem mass spectra using support vector machine (SVM)
por: Zou, An-Min, et al.
Publicado: (2009)

Global-local least-squares support vector machine (GLocal-LS-SVM)
por: Youssef Ali Amer, Ahmed
Publicado: (2023)

From QTL to QTN: Candidate Gene Set Approach and a Case Study in Porcine IGF1-FoxO Pathway
por: Wang, Minghui, et al.
Publicado: (2013)

A novel machine learning strategy for model selections - Stepwise Support Vector Machine (StepSVM)
por: Guo, Chao-Yu, et al.
Publicado: (2020)

ccSVM: correcting Support Vector Machines for confounding factors in biological data classification
por: Li, Limin, et al.
Publicado: (2011)

SVM-SulfoSite: A support vector machine based predictor for sulfenylation sites
por: AL-barakati, Hussam J., et al.
Publicado: (2018)

AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine
por: Meng, Chaolu, et al.
Publicado: (2019)

Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): An Algorithm for Joint Optimization of Discrimination and Calibration
por: Jiang, Xiaoqian, et al.
Publicado: (2012)

SVM Classifier – a comprehensive java interface for support vector machine classification of microarray data
por: Pirooznia, Mehdi, et al.
Publicado: (2006)

Support vector machine (SVM) based multiclass prediction with basic statistical analysis of plasminogen activators
por: Muthukrishnan, Selvaraj, et al.
Publicado: (2014)

SeqSVM: A Sequence-Based Support Vector Machine Method for Identifying Antioxidant Proteins
por: Xu, Lei, et al.
Publicado: (2018)

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine
por: Manavalan, Balachandran, et al.
Publicado: (2018)

Deep Learning Based Skin Lesion Segmentation and Classification of Melanoma Using Support Vector Machine (SVM)
por: D, Seeja R, et al.
Publicado: (2019)

Exploration of microRNAs in porcine milk exosomes
por: Chen, Ting, et al.
Publicado: (2014)

A SUPER Powerful Method for Genome Wide Association Study
por: Wang, Qishan, et al.
Publicado: (2014)

Active Contour Based Segmentation and Classification for Pleura Diseases Based on Otsu’s Thresholding and Support Vector Machine (SVM)
por: Malathi, M, et al.
Publicado: (2019)

Principal component based support vector machine (PC-SVM): a hybrid technique for software defect detection
por: Mustaqeem, Mohd., et al.
Publicado: (2021)

An improved accurate classification method for online education resources based on support vector machine (SVM): Algorithm and experiment
por: Quan, Zhi, et al.
Publicado: (2022)

Early Prediction of Dementia Using Feature Extraction Battery (FEB) and Optimized Support Vector Machine (SVM) for Classification
por: Javeed, Ashir, et al.
Publicado: (2023)

Diagnostic Value of Plasma MicroRNAs for Lung Cancer Using Support Vector Machine Model
por: Wang, Wei, et al.
Publicado: (2019)

LMethyR-SVM: Predict Human Enhancers Using Low Methylated Regions based on Weighted Support Vector Machines
por: Xu, Jingting, et al.
Publicado: (2016)

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines
por: Shi, Xu, et al.
Publicado: (2017)

Label Self-Advised Support Vector Machine (LSA-SVM)—Automated Classification of Foot Drop Rehabilitation Case Study
por: Adil Abboud, Sahar, et al.
Publicado: (2019)

A matching algorithm with isotope distribution pattern in LC-MS based on support vector machine (SVM) learning model
por: Cui, Jian, et al.
Publicado: (2019)

Haplotype-based genome-wide association study identifies loci and candidate genes for milk yield in Holsteins
por: Chen, Zhenliang, et al.
Publicado: (2018)

SVM and SVM Ensembles in Breast Cancer Prediction
por: Huang, Min-Wei, et al.
Publicado: (2017)

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features
por: Ding, Jiandong, et al.
Publicado: (2010)

A genome-wide scan for selection signatures in Yorkshire and Landrace pigs based on sequencing data
por: Wang, Zhen, et al.
Publicado: (2014)

A Comprehensive Expression Profile of MicroRNAs in Porcine Pituitary
por: Li, Hongyi, et al.
Publicado: (2011)

LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length
por: Bao, Yu, et al.
Publicado: (2016)

Correction: LMethyR-SVM: Predict Human Enhancers Using Low Methylated Regions based on Weighted Support Vector Machines
por: Xu, Jingting, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_hfn584fij2da6ic6pnjemk56ep