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Bioclipse-R: integrating management and visualization of life science data with statistical analysis

Summary: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construc...

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Detalles Bibliográficos
Autores principales: Spjuth, Ola, Georgiev, Valentin, Carlsson, Lars, Alvarsson, Jonathan, Berg, Arvid, Willighagen, Egon, Wikberg, Jarl E.S., Eklund, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546796/
https://www.ncbi.nlm.nih.gov/pubmed/23178637
http://dx.doi.org/10.1093/bioinformatics/bts681
Descripción
Sumario:Summary: Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. Contact: martin.eklund@farmbio.uu.se Supplementary information: Supplementary data are available at Bioinformatics online.