Cargando…

Visualization of protein interaction networks: problems and solutions

BACKGROUND: Visualization concerns the representation of data visually and is an important task in scientific research. Protein-protein interactions (PPI) are discovered using either wet lab techniques, such mass spectrometry, or in silico predictions tools, resulting in large collections of interac...

Descripción completa

Detalles Bibliográficos
Autores principales:	Agapito, Giuseppe, Guzzi, Pietro Hiram, Cannataro, Mario
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548679/ https://www.ncbi.nlm.nih.gov/pubmed/23368786 http://dx.doi.org/10.1186/1471-2105-14-S1-S1

Ejemplares similares

A Parallel Software Pipeline for DMET Microarray Genotyping Data Analysis
por: Agapito, Giuseppe, et al.
Publicado: (2018)

Data management of protein interaction networks
por: Cannataro, Mario, et al.
Publicado: (2012)

Design and Implementation of a New Local Alignment Algorithm for Multilayer Networks
por: Milano, Marianna, et al.
Publicado: (2022)

DMET-Analyzer: automatic analysis of Affymetrix DMET Data
por: Guzzi, Pietro Hiram, et al.
Publicado: (2012)

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
por: Milano, Marianna, et al.
Publicado: (2020)

Temporal networks in biology and medicine: a survey on models, algorithms, and tools
por: Hosseinzadeh, Mohammad Mehdi, et al.
Publicado: (2022)

OSAnalyzer: A Bioinformatics Tool for the Analysis of Gene Polymorphisms Enriched with Clinical Outcomes
por: Agapito, Giuseppe, et al.
Publicado: (2016)

DMET™ (Drug Metabolism Enzymes and Transporters): a pharmacogenomic platform for precision medicine
por: Arbitrio, Mariamena, et al.
Publicado: (2016)

Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
por: Agapito, Giuseppe, et al.
Publicado: (2021)

Challenges and Limitations of Biological Network Analysis
por: Milano, Marianna, et al.
Publicado: (2022)

Aligning Cross-Species Interactomes for Studying Complex and Chronic Diseases
por: Milano, Marianna, et al.
Publicado: (2023)

An Exploratory Application of Multilayer Networks and Pathway Analysis in Pharmacogenomics
por: Milano, Marianna, et al.
Publicado: (2023)

An extensive assessment of network alignment algorithms for comparison of brain connectomes
por: Milano, Marianna, et al.
Publicado: (2017)

Visual Data Mining of Biological Networks: One Size Does Not Fit All
por: Pastrello, Chiara, et al.
Publicado: (2013)

DMET(TM) Genotyping: Tools for Biomarkers Discovery in the Era of Precision Medicine
por: Agapito, Giuseppe, et al.
Publicado: (2020)

A statistical network pre-processing method to improve relevance and significance of gene lists in microarray gene expression studies
por: Agapito, Giuseppe, et al.
Publicado: (2022)

Bioinformatics and High-Performance Computing Methods for Deciphering and Fighting COVID-19—Editorial
por: Cannataro, Mario, et al.
Publicado: (2022)

Analysis of miRNA, mRNA, and TF interactions through network-based methods
por: Guzzi, Pietro H, et al.
Publicado: (2015)

COVID-WAREHOUSE: A Data Warehouse of Italian COVID-19, Pollution, and Climate Data
por: Agapito, Giuseppe, et al.
Publicado: (2020)

Application of CCTV Methodology to Analyze COVID-19 Evolution in Italy
por: Milano, Marianna, et al.
Publicado: (2022)

A Python Clustering Analysis Protocol of Genes Expression Data Sets
por: Agapito, Giuseppe, et al.
Publicado: (2022)

Using dual-network-analyser for communities detecting in dual networks
por: Guzzi, Pietro Hiram, et al.
Publicado: (2022)

AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology
por: Ciriello, Giovanni, et al.
Publicado: (2012)

μ-CS: An extension of the TM4 platform to manage Affymetrix binary data
por: Guzzi, Pietro H, et al.
Publicado: (2010)

Editorial: Graph representation learning in biological network
por: Roy, Swarup, et al.
Publicado: (2023)

COVID-19 Community Temporal Visualizer: a new methodology for the network-based analysis and visualization of COVID-19 data
por: Milano, Marianna, et al.
Publicado: (2021)

SARS-CoV-2 protein structure and sequence mutations: Evolutionary analysis and effects on virus variants
por: Lomoio, Ugo, et al.
Publicado: (2023)

A Method Based on Temporal Embedding for the Pairwise Alignment of Dynamic Networks
por: Cinaglia, Pietro, et al.
Publicado: (2023)

Identifying Candidate Gene–Disease Associations via Graph Neural Networks
por: Cinaglia, Pietro, et al.
Publicado: (2023)

Forecasting COVID-19 Epidemic Trends by Combining a Neural Network with R(t) Estimation
por: Cinaglia, Pietro, et al.
Publicado: (2022)

Computational analysis of the sequence-structure relation in SARS-CoV-2 spike protein using protein contact networks
por: Guzzi, Pietro Hiram, et al.
Publicado: (2023)

A systems biology approach to pathogenesis of gastric cancer: gene network modeling and pathway analysis
por: Mottaghi-Dastjerdi, Negar, et al.
Publicado: (2023)

Analyzing host-viral interactome of SARS-CoV-2 for identifying vulnerable host proteins during COVID-19 pathogenesis
por: Das, Jayanta Kumar, et al.
Publicado: (2021)

Integrated analysis of microRNAs, transcription factors and target genes expression discloses a specific molecular architecture of hyperdiploid multiple myeloma
por: Di Martino, Maria Teresa, et al.
Publicado: (2015)

Using miRNA-Analyzer for the Analysis of miRNA Data
por: Guzzi, Pietro Hiram, et al.
Publicado: (2016)

Spatio-Temporal Resource Mapping for Intensive Care Units at Regional Level for COVID-19 Emergency in Italy
por: Guzzi, Pietro Hiram, et al.
Publicado: (2020)

Multilayer network alignment based on topological assessment via embeddings
por: Cinaglia, Pietro, et al.
Publicado: (2023)

Structural analysis of SARS-CoV-2 Spike protein variants through graph embedding
por: Guzzi, Pietro Hiram, et al.
Publicado: (2022)

Beyond COVID-19 pandemic: Topology-aware optimization of vaccination strategy for minimizing virus spreading
por: Petrizzelli, Francesco, et al.
Publicado: (2022)

Genetic variants associated with Fabry disease progression despite enzyme replacement therapy
por: Scionti, Francesca, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_j0r06qfff6q5b0gra4gobi6fro