Cargando…

The road not taken: retreat and diverge in local search for simplified protein structure prediction

BACKGROUND: Given a protein's amino acid sequence, the protein structure prediction problem is to find a three dimensional structure that has the native energy level. For many decades, it has been one of the most challenging problems in computational biology. A simplified version of the problem...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shatabda, Swakkhar, Hakim Newton, MA, Rashid, Mahmood A, Pham, Duc Nghia, Sattar, Abdul
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549842/ https://www.ncbi.nlm.nih.gov/pubmed/23368768 http://dx.doi.org/10.1186/1471-2105-14-S2-S19

Ejemplares similares

Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice
por: Rashid, Mahmood A, et al.
Publicado: (2013)

How Good Are Simplified Models for Protein Structure Prediction?
por: Shatabda, Swakkhar, et al.
Publicado: (2014)

A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction
por: Rashid, Mahmood A., et al.
Publicado: (2014)

Hematopoietic (stem) cell development — how divergent are the roads taken?
por: Kauts, Mari‐Liis, et al.
Publicado: (2016)

HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features
por: Zaman, Rianon, et al.
Publicado: (2017)

Recent Development of Machine Learning Methods in Microbial Phosphorylation Sites
por: Rashid, Md. Mamunur, et al.
Publicado: (2020)

The long and winding road: the journey taken by headache sufferers in search of help
por: Davies, Paul T.G., et al.
Publicado: (2018)

BCG Vaccine—The Road Not Taken
por: Dow, Coad Thomas, et al.
Publicado: (2022)

Poribohon-BD: Bangladeshi local vehicle image dataset with annotation for classification
por: Tabassum, Shaira, et al.
Publicado: (2020)

The roads taken and not taken: Trends of anammox-based wastewater treatment in China
por: Shen, Yanwen
Publicado: (2022)

iDNAProt-ES: Identification of DNA-binding Proteins Using Evolutionary and Structural Features
por: Chowdhury, Shahana Yasmin, et al.
Publicado: (2017)

The Road Not Taken and Choices in Radiation Oncology
por: Coleman, C. Norman, et al.
Publicado: (2010)

A narratological study of The Road Not Taken : /
por: Cruz Ceballos, Antonio de Jesús
Publicado: (2017)

The Evolution of Cell Communication: The Road not Taken
por: Torday, J.S., et al.
Publicado: (2009)

The Road Not Taken: Commensal or Virulent Pathogen
Publicado: (2020)

Evolution of Brains and Computers: The Roads Not Taken
por: Solé, Ricard, et al.
Publicado: (2022)

Sequence-only evolutionary and predicted structural features for the prediction of stability changes in protein mutants
por: Folkman, Lukas, et al.
Publicado: (2013)

Towards sequence-based prediction of mutation-induced stability changes in unseen non-homologous proteins
por: Folkman, Lukas, et al.
Publicado: (2014)

Expression pattern divergence of duplicated genes in rice
por: Li, Zhe, et al.
Publicado: (2009)

The Road not Taken: Less Traveled Roads from the TGN to the Plasma Membrane
por: Spang, Anne
Publicado: (2015)

The road not taken: beyond our embarrassment and skepticism
por: Choi, Jeom-Il
Publicado: (2019)

Phase change for the accuracy of the median value in estimating divergence time
por: Jamshidpey, Arash, et al.
Publicado: (2013)

Protein structure prediction with local adjust tabu search algorithm
por: Lin, Xiaoli, et al.
Publicado: (2014)

Proposing a highly accurate protein structural class predictor using segmentation-based features
por: Dehzangi, Abdollah, et al.
Publicado: (2014)

Mixing Energy Models in Genetic Algorithms for On-Lattice Protein Structure Prediction
por: Rashid, Mahmood A., et al.
Publicado: (2013)

Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group
por: Toby, Inimary T, et al.
Publicado: (2014)

Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface
por: Olson, Brian S, et al.
Publicado: (2012)

FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
por: Abedeen, Iftekharul, et al.
Publicado: (2023)

FRnet-DTI: Deep convolutional neural network for drug-target interaction prediction
por: Rayhan, Farshid, et al.
Publicado: (2020)

A convolution based computational approach towards DNA N6-methyladenine site identification and motif extraction in rice genome
por: Rahman, Chowdhury Rafeed, et al.
Publicado: (2021)

A convolutional neural network based tool for predicting protein AMPylation sites from binary profile representation
por: Azim, Sayed Mehedi, et al.
Publicado: (2022)

Accumulation of CTCF-binding sites drives expression divergence between tandemly duplicated genes in humans
por: Liao, Ben-Yang, et al.
Publicado: (2014)

The brown adipocyte differentiation pathway in birds: An evolutionary road not taken
por: Mezentseva, Nadejda V, et al.
Publicado: (2008)

The Road Not Taken: Neural Correlates of Decision Making in Orbitofrontal Cortex
por: Steiner, Adam P., et al.
Publicado: (2012)

Blocking TrkB’s Effectors Reveal Benefits of the Road Not Taken
por: Danzer, Steve C.
Publicado: (2019)

Passage relevance models for genomics search
por: Urbain, Jay, et al.
Publicado: (2009)

Processing SPARQL queries with regular expressions in RDF databases
por: Lee, Jinsoo, et al.
Publicado: (2011)

Search for genetic factors predisposing to atherogenic dyslipidemia
por: Yip, Agustin G, et al.
Publicado: (2003)

BOSS: context-enhanced search for biomedical objects
por: Choi, Jaehoon, et al.
Publicado: (2012)

Three-Level Prediction of Protein Function by Combining Profile-Sequence Search, Profile-Profile Search, and Domain Co-Occurrence Networks
por: Wang, Zheng, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_gjqc1qgqf8uk0bcdc4p6i15rst