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Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population
Although family studies and genome-wide association studies have shown that genetic factors play a role in glaucoma, it has been difficult to identify the specific genetic variants involved. We tested 669 single nucleotide polymorphisms (SNPs) from the region of chromosome 2 that includes the GLC1B...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551945/ https://www.ncbi.nlm.nih.gov/pubmed/23349798 http://dx.doi.org/10.1371/journal.pone.0054115 |
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author | Shi, Dong Funayama, Tomoyo Mashima, Yukihiko Takano, Yoshimasa Shimizu, Ai Yamamoto, Kotaro Mengkegale, MinGe Miyazawa, Akiko Yasuda, Noriko Fukuchi, Takeo Abe, Haruki Ideta, Hidenao Nishida, Kohji Nakazawa, Toru Richards, Julia E. Fuse, Nobuo |
author_facet | Shi, Dong Funayama, Tomoyo Mashima, Yukihiko Takano, Yoshimasa Shimizu, Ai Yamamoto, Kotaro Mengkegale, MinGe Miyazawa, Akiko Yasuda, Noriko Fukuchi, Takeo Abe, Haruki Ideta, Hidenao Nishida, Kohji Nakazawa, Toru Richards, Julia E. Fuse, Nobuo |
author_sort | Shi, Dong |
collection | PubMed |
description | Although family studies and genome-wide association studies have shown that genetic factors play a role in glaucoma, it has been difficult to identify the specific genetic variants involved. We tested 669 single nucleotide polymorphisms (SNPs) from the region of chromosome 2 that includes the GLC1B glaucoma locus for association with primary open-angle glaucoma (POAG) and normal tension glaucoma (NTG) in the Japanese population. We performed a two-stage case-control study. The first cohort consisted of 123 POAG cases, 121 NTG cases and 120 controls: the second cohort consisted of 187 POAG cases, 286 NTG cases, and 271 controls. Out of six SNPs showing significant association with POAG in the first round screening, seven SNPs were tested in the second round. Rs678350 in the HK2 gene coding sequence showed significant allelic (p = 0.0027 in Stage Two, 2.7XE-4 in meta-analysis) association with POAG, and significant allelic (p = 4.7XE-4 in Stage Two, 1.0XE-5 in meta-analysis) association with NTG. Although alleles in the TMEM182 gene did not show significant association with glaucoma in the second round, subjects with the A/A allele in TMEM182 rs869833 showed worse visual field mean deviation (p = 0.01). Even though rs2033008 in the NCK2 gene coding sequence did not show significant association in the first round, it had previously shown association with NTG so it was tested for association with NTG in round 2 (p = 0.0053 in Stage Two). Immunohistochemistry showed that both HK2 and NCK2 are expressed in the retinal ganglion cell layer. Once multi-testing was taken into account, only HK2 showed significant association with POAG and NTG in Stage Two. Our data also support previous reports of NCK2 association with NTG, and raise questions about what role TMEM182 might play in phenotypic variability. Our data suggest that HK2 may play an important role in NTG in the Japanese population. |
format | Online Article Text |
id | pubmed-3551945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35519452013-01-24 Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population Shi, Dong Funayama, Tomoyo Mashima, Yukihiko Takano, Yoshimasa Shimizu, Ai Yamamoto, Kotaro Mengkegale, MinGe Miyazawa, Akiko Yasuda, Noriko Fukuchi, Takeo Abe, Haruki Ideta, Hidenao Nishida, Kohji Nakazawa, Toru Richards, Julia E. Fuse, Nobuo PLoS One Research Article Although family studies and genome-wide association studies have shown that genetic factors play a role in glaucoma, it has been difficult to identify the specific genetic variants involved. We tested 669 single nucleotide polymorphisms (SNPs) from the region of chromosome 2 that includes the GLC1B glaucoma locus for association with primary open-angle glaucoma (POAG) and normal tension glaucoma (NTG) in the Japanese population. We performed a two-stage case-control study. The first cohort consisted of 123 POAG cases, 121 NTG cases and 120 controls: the second cohort consisted of 187 POAG cases, 286 NTG cases, and 271 controls. Out of six SNPs showing significant association with POAG in the first round screening, seven SNPs were tested in the second round. Rs678350 in the HK2 gene coding sequence showed significant allelic (p = 0.0027 in Stage Two, 2.7XE-4 in meta-analysis) association with POAG, and significant allelic (p = 4.7XE-4 in Stage Two, 1.0XE-5 in meta-analysis) association with NTG. Although alleles in the TMEM182 gene did not show significant association with glaucoma in the second round, subjects with the A/A allele in TMEM182 rs869833 showed worse visual field mean deviation (p = 0.01). Even though rs2033008 in the NCK2 gene coding sequence did not show significant association in the first round, it had previously shown association with NTG so it was tested for association with NTG in round 2 (p = 0.0053 in Stage Two). Immunohistochemistry showed that both HK2 and NCK2 are expressed in the retinal ganglion cell layer. Once multi-testing was taken into account, only HK2 showed significant association with POAG and NTG in Stage Two. Our data also support previous reports of NCK2 association with NTG, and raise questions about what role TMEM182 might play in phenotypic variability. Our data suggest that HK2 may play an important role in NTG in the Japanese population. Public Library of Science 2013-01-22 /pmc/articles/PMC3551945/ /pubmed/23349798 http://dx.doi.org/10.1371/journal.pone.0054115 Text en © 2013 Shi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Shi, Dong Funayama, Tomoyo Mashima, Yukihiko Takano, Yoshimasa Shimizu, Ai Yamamoto, Kotaro Mengkegale, MinGe Miyazawa, Akiko Yasuda, Noriko Fukuchi, Takeo Abe, Haruki Ideta, Hidenao Nishida, Kohji Nakazawa, Toru Richards, Julia E. Fuse, Nobuo Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title | Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title_full | Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title_fullStr | Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title_full_unstemmed | Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title_short | Association of HK2 and NCK2 with Normal Tension Glaucoma in the Japanese Population |
title_sort | association of hk2 and nck2 with normal tension glaucoma in the japanese population |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551945/ https://www.ncbi.nlm.nih.gov/pubmed/23349798 http://dx.doi.org/10.1371/journal.pone.0054115 |
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