Cargando…

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information

BACKGROUND: Cotton is the world’s most important natural textile fiber and a significant oilseed crop. Decoding cotton genomes will provide the ultimate reference and resource for research and utilization of the species. Integration of high-density genetic maps with genomic sequence information will...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhao, Liang, Yuanda, Lv, Caiping, Cai, Xiangchao, Tong, Xiangdong, Chen, Wei, Zhang, Hao, Du, Xiuhua, Guo, Wangzhen, Guo
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557173/ https://www.ncbi.nlm.nih.gov/pubmed/23046547 http://dx.doi.org/10.1186/1471-2164-13-539

Ejemplares similares

Detection and mapping of homologous and homoeologous segments in homoeologous groups of allotetraploid cotton by BAC-FISH
por: Wang, Kai, et al.
Publicado: (2007)

Molecular Mapping of Restriction-Site Associated DNA Markers in Allotetraploid Upland Cotton
por: Wang, Yangkun, et al.
Publicado: (2015)

Divergence and evolution of cotton bHLH proteins from diploid to allotetraploid
por: Liu, Bingliang, et al.
Publicado: (2018)

Development and mapping of SNP assays in allotetraploid cotton
por: Byers, Robert L., et al.
Publicado: (2012)

Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons
por: Fang, Lei, et al.
Publicado: (2017)

Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton
por: Cai, Caiping, et al.
Publicado: (2017)

Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton
por: Cai, Caiping, et al.
Publicado: (2018)

Divergent improvement of two cultivated allotetraploid cotton species
por: Fang, Lei, et al.
Publicado: (2021)

Characterization of expressed sequence tags from developing fibers of Gossypium barbadense and evaluation of insertion-deletion variation in tetraploid cultivated cotton species
por: Lv, Yuanda, et al.
Publicado: (2013)

Comparative Transcriptomics Reveals Jasmonic Acid-Associated Metabolism Related to Cotton Fiber Initiation
por: Wang, Liman, et al.
Publicado: (2015)

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons
por: Peng, Renhai, et al.
Publicado: (2022)

Multi‐omics mapping of chromatin interaction resolves the fine hierarchy of 3D genome in allotetraploid cotton
por: Huang, Xianhui, et al.
Publicado: (2022)

Genome-wide identification of mitogen-activated protein kinase gene family in Gossypium raimondii and the function of their corresponding orthologs in tetraploid cultivated cotton
por: Zhang, Xueying, et al.
Publicado: (2014)

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids
por: Saski, Christopher A., et al.
Publicado: (2017)

Evaluation and Exploration of Favorable QTL Alleles for Salt Stress Related Traits in Cotton Cultivars (G. hirsutum L.)
por: Du, Lei, et al.
Publicado: (2016)

Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
por: Wang, Sen, et al.
Publicado: (2015)

Integration analysis of MKK and MAPK family members highlights potential MAPK signaling modules in cotton
por: Zhang, Xueying, et al.
Publicado: (2016)

Evolution, expression and functional analysis of cultivated allotetraploid cotton DIR genes
por: Liu, Zhengwen, et al.
Publicado: (2021)

Genetic Basis of Fiber Improvement and Decreased Stress Tolerance in Cultivated Versus Semi-Domesticated Upland Cotton
por: Zhu, Guozhong, et al.
Publicado: (2019)

High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis
por: Cai, Caiping, et al.
Publicado: (2017)

Identification of Candidate Genes for Lint Percentage and Fiber Quality Through QTL Mapping and Transcriptome Analysis in an Allotetraploid Interspecific Cotton CSSLs Population
por: Yang, Peng, et al.
Publicado: (2022)

Construction of BAC contig maps of homoeologous chromosomes A12 and D12 of Gossypium hirsutum L. acc. TM-1
por: Lv, Yanhui, et al.
Publicado: (2015)

Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton
por: Zhu, De, et al.
Publicado: (2020)

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton
por: You, Jiaqi, et al.
Publicado: (2023)

Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map
por: Li, Ximei, et al.
Publicado: (2016)

Molecular Evolution and Phylogenetic Analysis of Eight COL Superfamily Genes in Group I Related to Photoperiodic Regulation of Flowering Time in Wild and Domesticated Cotton (Gossypium) Species
por: Zhang, Rui, et al.
Publicado: (2015)

Genome-Wide Identification and Analysis of Class III Peroxidases in Allotetraploid Cotton (Gossypium hirsutum L.) and their Responses to PK Deficiency
por: Duan, Pengfei, et al.
Publicado: (2019)

Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii
por: Zhang, Feng, et al.
Publicado: (2016)

Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton
por: Guan, Xueying, et al.
Publicado: (2014)

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping
por: Hulse-Kemp, Amanda M., et al.
Publicado: (2015)

High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS)
por: Diouf, Latyr, et al.
Publicado: (2017)

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea
por: Clevenger, Josh, et al.
Publicado: (2016)

Retraction Note: Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii
por: Zhang, Feng, et al.
Publicado: (2019)

Dynamic Roles for Small RNAs and DNA Methylation during Ovule and Fiber Development in Allotetraploid Cotton
por: Song, Qingxin, et al.
Publicado: (2015)

Retrieving a disrupted gene encoding phospholipase A for fibre enhancement in allotetraploid cultivated cotton
por: Fang, Lei, et al.
Publicado: (2022)

Open-Bud Duplicate Loci Are Identified as MML10s, Orthologs of MIXTA-Like Genes on Homologous Chromosomes of Allotetraploid Cotton
por: Chen, Wei, et al.
Publicado: (2020)

A Complex Recombination Pattern in the Genome of Allotetraploid Brassica napus as Revealed by a High-Density Genetic Map
por: Cai, Guangqin, et al.
Publicado: (2014)

Aberrant phenotype and transcriptome expression during fiber cell wall thickening caused by the mutation of the Im gene in immature fiber (im) mutant in Gossypium hirsutum L
por: Wang, Cheng, et al.
Publicado: (2014)

Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons
por: Song, Qingxin, et al.
Publicado: (2017)

Dynamic roles of small RNAs and DNA methylation associated with heterosis in allotetraploid cotton (Gossypium hirsutum L.)
por: Hamid, Rasmieh, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_chnvfl54272bdpaeqit61grhjp