READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation

Summary: READSCAN is a highly scalable parallel program to identify non-host sequences (of potential pathogen origin) and estimate their genome relative abundance in high-throughput sequence datasets. READSCAN accurately classified human and viral sequences on a 20.1 million reads simulated dataset...

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Detalles Bibliográficos
Autores principales: Naeem, Raeece, Rashid, Mamoon, Pain, Arnab
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562070/
https://www.ncbi.nlm.nih.gov/pubmed/23193222
http://dx.doi.org/10.1093/bioinformatics/bts684

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562070/
https://www.ncbi.nlm.nih.gov/pubmed/23193222
http://dx.doi.org/10.1093/bioinformatics/bts684

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