Cargando…

Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells

BACKGROUND: Current experimental evidence indicates that functionally related genes show coordinated expression in order to perform their cellular functions. In this way, the cell transcriptional machinery can respond optimally to internal or external stimuli. This provides a research opportunity to...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhu, Mingzhu, Deng, Xin, Joshi, Trupti, Xu, Dong, Stacey, Gary, Cheng, Jianlin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3563468/ https://www.ncbi.nlm.nih.gov/pubmed/22938179 http://dx.doi.org/10.1186/1471-2164-13-437

Ejemplares similares

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data
por: Zhu, Mingzhu, et al.
Publicado: (2013)

SoyDB: a knowledge database of soybean transcription factors
por: Wang, Zheng, et al.
Publicado: (2010)

SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
por: Wang, Juexin, et al.
Publicado: (2019)

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
por: Joshi, Trupti, et al.
Publicado: (2012)

Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model
por: Su, Lingtao, et al.
Publicado: (2022)

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding
por: Joshi, Trupti, et al.
Publicado: (2014)

Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods
por: Hou, Jie, et al.
Publicado: (2015)

Integrating many co-splicing networks to reconstruct splicing regulatory modules
por: Dai, Chao, et al.
Publicado: (2012)

Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean
por: Liu, Yang, et al.
Publicado: (2019)

Major Soybean Maturity Gene Haplotypes Revealed by SNPViz Analysis of 72 Sequenced Soybean Genomes
por: Langewisch, Tiffany, et al.
Publicado: (2014)

Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks
por: Wang, Juexin, et al.
Publicado: (2020)

SNP discovery by high-throughput sequencing in soybean
por: Wu, Xiaolei, et al.
Publicado: (2010)

Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
por: Dietz, Nicholas, et al.
Publicado: (2022)

A Protein Domain Co-Occurrence Network Approach for Predicting Protein Function and Inferring Species Phylogeny
por: Wang, Zheng, et al.
Publicado: (2011)

De-novo reconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters
por: Oubounyt, Mhaned, et al.
Publicado: (2023)

CoRegNet: reconstruction and integrated analysis of co-regulatory networks
por: Nicolle, Rémy, et al.
Publicado: (2015)

Construction and analysis of degradome-dependent microRNA regulatory networks in soybean
por: Wang, Rui, et al.
Publicado: (2019)

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles
por: Valdés-López, Oswaldo, et al.
Publicado: (2016)

Identification of transcriptional regulatory nodes in soybean defense networks using transient co-transactivation assays
por: Wang, Yongli, et al.
Publicado: (2015)

System approaches to study root hairs as a single cell plant model: current status and future perspectives
por: Hossain, Md Shakhawat, et al.
Publicado: (2015)

Soybean miR159-GmMYB33 Regulatory Network Involved in Gibberellin-Modulated Resistance to Heterodera glycines
por: Lei, Piao, et al.
Publicado: (2021)

Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases
por: Guttikonda, Satish K, et al.
Publicado: (2010)

Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655
por: Jiao, Yongqing, et al.
Publicado: (2014)

Genomic differences between cultivated soybean, G. max and its wild relative G. soja
por: Joshi, Trupti, et al.
Publicado: (2013)

Landscape of genomic diversity and trait discovery in soybean
por: Valliyodan, Babu, et al.
Publicado: (2016)

Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana
por: Yu, Xianbin, et al.
Publicado: (2014)

Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds
por: Redekar, Neelam, et al.
Publicado: (2017)

Genetic regulatory networks of soybean seed size, oil and protein contents
por: Duan, Zongbiao, et al.
Publicado: (2023)

Gene regulatory network inference in soybean upon infection by Phytophthora sojae
por: Hale, Brett, et al.
Publicado: (2023)

Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response
por: Quach, Truyen N., et al.
Publicado: (2014)

Study on the Regulatory Effects of GA(3) on Soybean Internode Elongation
por: Shan, Fuxin, et al.
Publicado: (2021)

Reconstruct gene regulatory network using slice pattern model
por: Wang, Yadong, et al.
Publicado: (2009)

Reconstructing gene regulatory networks of biological function using differential equations of multilayer perceptrons
por: Mao, Guo, et al.
Publicado: (2022)

Systems and Evolutionary Characterization of MicroRNAs and Their Underlying Regulatory Networks in Soybean Cotyledons
por: Goettel, Wolfgang, et al.
Publicado: (2014)

Topology Consistency of Disease-specific Differential Co-regulatory Networks
por: Nazarieh, Maryam, et al.
Publicado: (2019)

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance
por: Chai, Chenglin, et al.
Publicado: (2015)

A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans
por: Chang, Haowu, et al.
Publicado: (2022)

Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe)
por: Wan, Jinrong, et al.
Publicado: (2015)

Effects of Time Point Measurement on the Reconstruction of Gene Regulatory Networks
por: Yan, Wenying, et al.
Publicado: (2010)

State Space Model with hidden variables for reconstruction of gene regulatory networks
por: Wu, Xi, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_5uemogn8rjircj8s53gs2n9mvb