Cargando…

Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites

A common limitation for the identification of novel activities from functional (meta) genomic screens is the low number of active clones detected relative to the number of clones screened. Here we demonstrate that constructing libraries with strains known to produce bioactives can greatly enhance th...

Descripción completa

Detalles Bibliográficos
Autores principales: Penesyan, Anahit, Ballestriero, Francesco, Daim, Malak, Kjelleberg, Staffan, Thomas, Torsten, Egan, Suhelen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564156/
https://www.ncbi.nlm.nih.gov/pubmed/23271424
http://dx.doi.org/10.3390/md11010040
_version_ 1782258291516112896
author Penesyan, Anahit
Ballestriero, Francesco
Daim, Malak
Kjelleberg, Staffan
Thomas, Torsten
Egan, Suhelen
author_facet Penesyan, Anahit
Ballestriero, Francesco
Daim, Malak
Kjelleberg, Staffan
Thomas, Torsten
Egan, Suhelen
author_sort Penesyan, Anahit
collection PubMed
description A common limitation for the identification of novel activities from functional (meta) genomic screens is the low number of active clones detected relative to the number of clones screened. Here we demonstrate that constructing libraries with strains known to produce bioactives can greatly enhance the screening efficiency, by increasing the “hit-rate” and unmasking multiple activities from the same bacterial source.
format Online
Article
Text
id pubmed-3564156
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-35641562013-02-11 Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites Penesyan, Anahit Ballestriero, Francesco Daim, Malak Kjelleberg, Staffan Thomas, Torsten Egan, Suhelen Mar Drugs Article A common limitation for the identification of novel activities from functional (meta) genomic screens is the low number of active clones detected relative to the number of clones screened. Here we demonstrate that constructing libraries with strains known to produce bioactives can greatly enhance the screening efficiency, by increasing the “hit-rate” and unmasking multiple activities from the same bacterial source. MDPI 2012-12-27 /pmc/articles/PMC3564156/ /pubmed/23271424 http://dx.doi.org/10.3390/md11010040 Text en © 2013 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Penesyan, Anahit
Ballestriero, Francesco
Daim, Malak
Kjelleberg, Staffan
Thomas, Torsten
Egan, Suhelen
Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title_full Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title_fullStr Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title_full_unstemmed Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title_short Assessing the Effectiveness of Functional Genetic Screens for the Identification of Bioactive Metabolites
title_sort assessing the effectiveness of functional genetic screens for the identification of bioactive metabolites
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564156/
https://www.ncbi.nlm.nih.gov/pubmed/23271424
http://dx.doi.org/10.3390/md11010040
work_keys_str_mv AT penesyananahit assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites
AT ballestrierofrancesco assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites
AT daimmalak assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites
AT kjellebergstaffan assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites
AT thomastorsten assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites
AT egansuhelen assessingtheeffectivenessoffunctionalgeneticscreensfortheidentificationofbioactivemetabolites