Cargando…
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T))
Niabella soli Weon et al. 2008 is a member of the Chitinophagaceae, a family within the class Sphingobacteriia that is poorly characterized at the genome level, thus far. N. soli strain JS13-8(T) is of interest for its ability to produce a variety of glycosyl hydrolases. The genome of N. soli strain...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Michigan State University
2012
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569382/ https://www.ncbi.nlm.nih.gov/pubmed/23408178 http://dx.doi.org/10.4056/sigs.3117229 |
| _version_ | 1782258893725892608 |
|---|---|
| author | Anderson, Iain Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Ivanova, Natalia |
| author_facet | Anderson, Iain Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Ivanova, Natalia |
| author_sort | Anderson, Iain |
| collection | PubMed |
| description | Niabella soli Weon et al. 2008 is a member of the Chitinophagaceae, a family within the class Sphingobacteriia that is poorly characterized at the genome level, thus far. N. soli strain JS13-8(T) is of interest for its ability to produce a variety of glycosyl hydrolases. The genome of N. soli strain JS13-8(T) is only the second genome sequence of a type strain from the family Chitinophagaceae to be published, and the first one from the genus Niabella. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,697,343 bp long chromosome with its 3,931 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
| format | Online Article Text |
| id | pubmed-3569382 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2012 |
| publisher | Michigan State University |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-35693822013-02-13 Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) Anderson, Iain Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Ivanova, Natalia Stand Genomic Sci Short Genome Reports Niabella soli Weon et al. 2008 is a member of the Chitinophagaceae, a family within the class Sphingobacteriia that is poorly characterized at the genome level, thus far. N. soli strain JS13-8(T) is of interest for its ability to produce a variety of glycosyl hydrolases. The genome of N. soli strain JS13-8(T) is only the second genome sequence of a type strain from the family Chitinophagaceae to be published, and the first one from the genus Niabella. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,697,343 bp long chromosome with its 3,931 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-12-04 /pmc/articles/PMC3569382/ /pubmed/23408178 http://dx.doi.org/10.4056/sigs.3117229 Text en Copyright © retained by original authors. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Short Genome Reports Anderson, Iain Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Ivanova, Natalia Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title | Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title_full | Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title_fullStr | Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title_full_unstemmed | Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title_short | Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) |
| title_sort | genome sequence of the flexirubin-pigmented soil bacterium niabella soli type strain (js13-8(t)) |
| topic | Short Genome Reports |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569382/ https://www.ncbi.nlm.nih.gov/pubmed/23408178 http://dx.doi.org/10.4056/sigs.3117229 |
| work_keys_str_mv | AT andersoniain genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT munkchristine genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT lapidusalla genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT nolanmatt genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT lucassusan genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT ticehope genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT delriotijanaglavina genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT chengjanfang genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT hancliff genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT tapiaroxanne genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT goodwinlynne genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT pitlucksam genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT liolioskonstantinos genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT mavromatiskonstantinos genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT paganiioanna genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT mikhailovanatalia genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT patiamrita genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT chenamy genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT palaniappankrishna genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT landmiriam genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT rohdemanfred genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT tindallbrianj genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT gokermarkus genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT detterjohnc genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT woyketanja genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT bristowjames genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT eisenjonathana genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT markowitzvictor genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT hugenholtzphilip genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT kyrpidesnikosc genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT klenkhanspeter genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t AT ivanovanatalia genomesequenceoftheflexirubinpigmentedsoilbacteriumniabellasolitypestrainjs138t |