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OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570217/ https://www.ncbi.nlm.nih.gov/pubmed/23267176 http://dx.doi.org/10.1093/bioinformatics/bts718 |
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author | Maguire, Eamonn González-Beltrán, Alejandra Whetzel, Patricia L. Sansone, Susanna-Assunta Rocca-Serra, Philippe |
author_facet | Maguire, Eamonn González-Beltrán, Alejandra Whetzel, Patricia L. Sansone, Susanna-Assunta Rocca-Serra, Philippe |
author_sort | Maguire, Eamonn |
collection | PubMed |
description | Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that brings ontology lookup and tagging capabilities into a cloud-based collaborative editing environment, harnessing Google Spreadsheets and the NCBO Web services. It is a general purpose, format-agnostic tool that may serve as a component of the ISA software suite. OntoMaton can also be used to assist the ontology development process. Availability: OntoMaton is freely available from Google widgets under the CPAL open source license; documentation and examples at: https://github.com/ISA-tools/OntoMaton. Contact: isatools@googlegroups.com |
format | Online Article Text |
id | pubmed-3570217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-35702172013-02-13 OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets Maguire, Eamonn González-Beltrán, Alejandra Whetzel, Patricia L. Sansone, Susanna-Assunta Rocca-Serra, Philippe Bioinformatics Applications Notes Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that brings ontology lookup and tagging capabilities into a cloud-based collaborative editing environment, harnessing Google Spreadsheets and the NCBO Web services. It is a general purpose, format-agnostic tool that may serve as a component of the ISA software suite. OntoMaton can also be used to assist the ontology development process. Availability: OntoMaton is freely available from Google widgets under the CPAL open source license; documentation and examples at: https://github.com/ISA-tools/OntoMaton. Contact: isatools@googlegroups.com Oxford University Press 2013-02-15 2012-12-24 /pmc/articles/PMC3570217/ /pubmed/23267176 http://dx.doi.org/10.1093/bioinformatics/bts718 Text en © The Author 2012. Published by Oxford University Press on behalf of The Society for Financial Studies. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited |
spellingShingle | Applications Notes Maguire, Eamonn González-Beltrán, Alejandra Whetzel, Patricia L. Sansone, Susanna-Assunta Rocca-Serra, Philippe OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title | OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title_full | OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title_fullStr | OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title_full_unstemmed | OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title_short | OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets |
title_sort | ontomaton: a bioportal powered ontology widget for google spreadsheets |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570217/ https://www.ncbi.nlm.nih.gov/pubmed/23267176 http://dx.doi.org/10.1093/bioinformatics/bts718 |
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