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OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets

Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that...

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Detalles Bibliográficos
Autores principales: Maguire, Eamonn, González-Beltrán, Alejandra, Whetzel, Patricia L., Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570217/
https://www.ncbi.nlm.nih.gov/pubmed/23267176
http://dx.doi.org/10.1093/bioinformatics/bts718
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author Maguire, Eamonn
González-Beltrán, Alejandra
Whetzel, Patricia L.
Sansone, Susanna-Assunta
Rocca-Serra, Philippe
author_facet Maguire, Eamonn
González-Beltrán, Alejandra
Whetzel, Patricia L.
Sansone, Susanna-Assunta
Rocca-Serra, Philippe
author_sort Maguire, Eamonn
collection PubMed
description Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that brings ontology lookup and tagging capabilities into a cloud-based collaborative editing environment, harnessing Google Spreadsheets and the NCBO Web services. It is a general purpose, format-agnostic tool that may serve as a component of the ISA software suite. OntoMaton can also be used to assist the ontology development process. Availability: OntoMaton is freely available from Google widgets under the CPAL open source license; documentation and examples at: https://github.com/ISA-tools/OntoMaton. Contact: isatools@googlegroups.com
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spelling pubmed-35702172013-02-13 OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets Maguire, Eamonn González-Beltrán, Alejandra Whetzel, Patricia L. Sansone, Susanna-Assunta Rocca-Serra, Philippe Bioinformatics Applications Notes Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. Results: OntoMaton is an open source solution that brings ontology lookup and tagging capabilities into a cloud-based collaborative editing environment, harnessing Google Spreadsheets and the NCBO Web services. It is a general purpose, format-agnostic tool that may serve as a component of the ISA software suite. OntoMaton can also be used to assist the ontology development process. Availability: OntoMaton is freely available from Google widgets under the CPAL open source license; documentation and examples at: https://github.com/ISA-tools/OntoMaton. Contact: isatools@googlegroups.com Oxford University Press 2013-02-15 2012-12-24 /pmc/articles/PMC3570217/ /pubmed/23267176 http://dx.doi.org/10.1093/bioinformatics/bts718 Text en © The Author 2012. Published by Oxford University Press on behalf of The Society for Financial Studies. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited
spellingShingle Applications Notes
Maguire, Eamonn
González-Beltrán, Alejandra
Whetzel, Patricia L.
Sansone, Susanna-Assunta
Rocca-Serra, Philippe
OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title_full OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title_fullStr OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title_full_unstemmed OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title_short OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets
title_sort ontomaton: a bioportal powered ontology widget for google spreadsheets
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570217/
https://www.ncbi.nlm.nih.gov/pubmed/23267176
http://dx.doi.org/10.1093/bioinformatics/bts718
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