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Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))

Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter,...

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Autores principales: Plugge, Caroline M., Henstra, Anne M., Worm, Petra, Swarts, Daan C., Paulitsch-Fuchs, Astrid H., Scholten, Johannes C.M., Lykidis, Athanasios, Lapidus, Alla L., Goltsman, Eugene, Kim, Edwin, McDonald, Erin, Rohlin, Lars, Crable, Bryan R., Gunsalus, Robert P., Stams, Alfons J.M., McInerney, Michael J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570798/
https://www.ncbi.nlm.nih.gov/pubmed/23450070
http://dx.doi.org/10.4056/sigs.2996379
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author Plugge, Caroline M.
Henstra, Anne M.
Worm, Petra
Swarts, Daan C.
Paulitsch-Fuchs, Astrid H.
Scholten, Johannes C.M.
Lykidis, Athanasios
Lapidus, Alla L.
Goltsman, Eugene
Kim, Edwin
McDonald, Erin
Rohlin, Lars
Crable, Bryan R.
Gunsalus, Robert P.
Stams, Alfons J.M.
McInerney, Michael J.
author_facet Plugge, Caroline M.
Henstra, Anne M.
Worm, Petra
Swarts, Daan C.
Paulitsch-Fuchs, Astrid H.
Scholten, Johannes C.M.
Lykidis, Athanasios
Lapidus, Alla L.
Goltsman, Eugene
Kim, Edwin
McDonald, Erin
Rohlin, Lars
Crable, Bryan R.
Gunsalus, Robert P.
Stams, Alfons J.M.
McInerney, Michael J.
author_sort Plugge, Caroline M.
collection PubMed
description Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter, and its release of products that serve as substrates for other microorganisms. The strain is able to ferment fumarate in pure culture to CO(2) and succinate, and is also able to grow as a sulfate reducer with propionate as an electron donor. This is the first complete genome sequence of a member of the genus Syntrophobacter and a member genus in the family Syntrophobacteraceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,990,251 bp long genome with its 4,098 protein-coding and 81 RNA genes is a part of the Microbial Genome Program (MGP) and the Genomes to Life (GTL) Program project.
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spelling pubmed-35707982013-02-28 Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) Plugge, Caroline M. Henstra, Anne M. Worm, Petra Swarts, Daan C. Paulitsch-Fuchs, Astrid H. Scholten, Johannes C.M. Lykidis, Athanasios Lapidus, Alla L. Goltsman, Eugene Kim, Edwin McDonald, Erin Rohlin, Lars Crable, Bryan R. Gunsalus, Robert P. Stams, Alfons J.M. McInerney, Michael J. Stand Genomic Sci Short Genome Reports Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter, and its release of products that serve as substrates for other microorganisms. The strain is able to ferment fumarate in pure culture to CO(2) and succinate, and is also able to grow as a sulfate reducer with propionate as an electron donor. This is the first complete genome sequence of a member of the genus Syntrophobacter and a member genus in the family Syntrophobacteraceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,990,251 bp long genome with its 4,098 protein-coding and 81 RNA genes is a part of the Microbial Genome Program (MGP) and the Genomes to Life (GTL) Program project. Michigan State University 2012-09-26 /pmc/articles/PMC3570798/ /pubmed/23450070 http://dx.doi.org/10.4056/sigs.2996379 Text en Copyright © retained by original authors. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Plugge, Caroline M.
Henstra, Anne M.
Worm, Petra
Swarts, Daan C.
Paulitsch-Fuchs, Astrid H.
Scholten, Johannes C.M.
Lykidis, Athanasios
Lapidus, Alla L.
Goltsman, Eugene
Kim, Edwin
McDonald, Erin
Rohlin, Lars
Crable, Bryan R.
Gunsalus, Robert P.
Stams, Alfons J.M.
McInerney, Michael J.
Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title_full Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title_fullStr Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title_full_unstemmed Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title_short Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
title_sort complete genome sequence of syntrophobacter fumaroxidans strain (mpob(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570798/
https://www.ncbi.nlm.nih.gov/pubmed/23450070
http://dx.doi.org/10.4056/sigs.2996379
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