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Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter,...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570798/ https://www.ncbi.nlm.nih.gov/pubmed/23450070 http://dx.doi.org/10.4056/sigs.2996379 |
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author | Plugge, Caroline M. Henstra, Anne M. Worm, Petra Swarts, Daan C. Paulitsch-Fuchs, Astrid H. Scholten, Johannes C.M. Lykidis, Athanasios Lapidus, Alla L. Goltsman, Eugene Kim, Edwin McDonald, Erin Rohlin, Lars Crable, Bryan R. Gunsalus, Robert P. Stams, Alfons J.M. McInerney, Michael J. |
author_facet | Plugge, Caroline M. Henstra, Anne M. Worm, Petra Swarts, Daan C. Paulitsch-Fuchs, Astrid H. Scholten, Johannes C.M. Lykidis, Athanasios Lapidus, Alla L. Goltsman, Eugene Kim, Edwin McDonald, Erin Rohlin, Lars Crable, Bryan R. Gunsalus, Robert P. Stams, Alfons J.M. McInerney, Michael J. |
author_sort | Plugge, Caroline M. |
collection | PubMed |
description | Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter, and its release of products that serve as substrates for other microorganisms. The strain is able to ferment fumarate in pure culture to CO(2) and succinate, and is also able to grow as a sulfate reducer with propionate as an electron donor. This is the first complete genome sequence of a member of the genus Syntrophobacter and a member genus in the family Syntrophobacteraceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,990,251 bp long genome with its 4,098 protein-coding and 81 RNA genes is a part of the Microbial Genome Program (MGP) and the Genomes to Life (GTL) Program project. |
format | Online Article Text |
id | pubmed-3570798 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-35707982013-02-28 Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) Plugge, Caroline M. Henstra, Anne M. Worm, Petra Swarts, Daan C. Paulitsch-Fuchs, Astrid H. Scholten, Johannes C.M. Lykidis, Athanasios Lapidus, Alla L. Goltsman, Eugene Kim, Edwin McDonald, Erin Rohlin, Lars Crable, Bryan R. Gunsalus, Robert P. Stams, Alfons J.M. McInerney, Michael J. Stand Genomic Sci Short Genome Reports Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H(2) and CO(2) during the overall degradation of organic matter, and its release of products that serve as substrates for other microorganisms. The strain is able to ferment fumarate in pure culture to CO(2) and succinate, and is also able to grow as a sulfate reducer with propionate as an electron donor. This is the first complete genome sequence of a member of the genus Syntrophobacter and a member genus in the family Syntrophobacteraceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,990,251 bp long genome with its 4,098 protein-coding and 81 RNA genes is a part of the Microbial Genome Program (MGP) and the Genomes to Life (GTL) Program project. Michigan State University 2012-09-26 /pmc/articles/PMC3570798/ /pubmed/23450070 http://dx.doi.org/10.4056/sigs.2996379 Text en Copyright © retained by original authors. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Plugge, Caroline M. Henstra, Anne M. Worm, Petra Swarts, Daan C. Paulitsch-Fuchs, Astrid H. Scholten, Johannes C.M. Lykidis, Athanasios Lapidus, Alla L. Goltsman, Eugene Kim, Edwin McDonald, Erin Rohlin, Lars Crable, Bryan R. Gunsalus, Robert P. Stams, Alfons J.M. McInerney, Michael J. Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title | Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title_full | Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title_fullStr | Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title_full_unstemmed | Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title_short | Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)) |
title_sort | complete genome sequence of syntrophobacter fumaroxidans strain (mpob(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570798/ https://www.ncbi.nlm.nih.gov/pubmed/23450070 http://dx.doi.org/10.4056/sigs.2996379 |
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