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RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011

At the GSC11 meeting (4-6 April 2011, Hinxton, England, the GSC’s genomic biodiversity working group (GBWG) developed an initial model for a data management testbed at the interface of biodiversity with genomics and metagenomics. With representatives of the Global Biodiversity Information Facility (...

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Autores principales: Robbins, Robert J., Cochrane, Guy, Davies, Neil, Dawyndt, Peter, Kottmann, Renzo, Krishtalka, Leonard (Kris), Morrison, Norman, Tuama, Éamonn Ó, San Gil, Inigo, Wooley, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570803/
https://www.ncbi.nlm.nih.gov/pubmed/23451293
http://dx.doi.org/10.4056/sigs.3146509
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author Robbins, Robert J.
Cochrane, Guy
Davies, Neil
Dawyndt, Peter
Kottmann, Renzo
Krishtalka, Leonard (Kris)
Morrison, Norman
Tuama, Éamonn Ó
San Gil, Inigo
Wooley, John
author_facet Robbins, Robert J.
Cochrane, Guy
Davies, Neil
Dawyndt, Peter
Kottmann, Renzo
Krishtalka, Leonard (Kris)
Morrison, Norman
Tuama, Éamonn Ó
San Gil, Inigo
Wooley, John
author_sort Robbins, Robert J.
collection PubMed
description At the GSC11 meeting (4-6 April 2011, Hinxton, England, the GSC’s genomic biodiversity working group (GBWG) developed an initial model for a data management testbed at the interface of biodiversity with genomics and metagenomics. With representatives of the Global Biodiversity Information Facility (GBIF) participating, it was agreed that the most useful course of action would be for GBIF to collaborate with the GSC in its ongoing GBWG workshops to achieve common goals around interoperability/data integration across (meta)-genomic and species level data. It was determined that a quick comparison should be made of the contents of the Darwin Core (DwC) and the GSC data checklists, with a goal of determining their degree of overlap and compatibility. An ad-hoc task group lead by Renzo Kottman and Peter Dawyndt undertook an initial comparison between the Darwin Core (DwC) standard used by the Global Biodiversity Information Facility (GBIF) and the MIxS checklists put forward by the Genomic Standards Consortium (GSC). A term-by-term comparison showed that DwC and GSC concepts complement each other far more than they compete with each other. Because the preliminary analysis done at this meeting was based on expertise with GSC standards, but not with DwC standards, the group recommended that a joint meeting of DwC and GSC experts be convened as soon as possible to continue this joint assessment and to propose additional work going forward.
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spelling pubmed-35708032013-02-28 RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011 Robbins, Robert J. Cochrane, Guy Davies, Neil Dawyndt, Peter Kottmann, Renzo Krishtalka, Leonard (Kris) Morrison, Norman Tuama, Éamonn Ó San Gil, Inigo Wooley, John Stand Genomic Sci Community Dialog At the GSC11 meeting (4-6 April 2011, Hinxton, England, the GSC’s genomic biodiversity working group (GBWG) developed an initial model for a data management testbed at the interface of biodiversity with genomics and metagenomics. With representatives of the Global Biodiversity Information Facility (GBIF) participating, it was agreed that the most useful course of action would be for GBIF to collaborate with the GSC in its ongoing GBWG workshops to achieve common goals around interoperability/data integration across (meta)-genomic and species level data. It was determined that a quick comparison should be made of the contents of the Darwin Core (DwC) and the GSC data checklists, with a goal of determining their degree of overlap and compatibility. An ad-hoc task group lead by Renzo Kottman and Peter Dawyndt undertook an initial comparison between the Darwin Core (DwC) standard used by the Global Biodiversity Information Facility (GBIF) and the MIxS checklists put forward by the Genomic Standards Consortium (GSC). A term-by-term comparison showed that DwC and GSC concepts complement each other far more than they compete with each other. Because the preliminary analysis done at this meeting was based on expertise with GSC standards, but not with DwC standards, the group recommended that a joint meeting of DwC and GSC experts be convened as soon as possible to continue this joint assessment and to propose additional work going forward. Michigan State University 2012-09-24 /pmc/articles/PMC3570803/ /pubmed/23451293 http://dx.doi.org/10.4056/sigs.3146509 Text en Copyright © retained by original authors. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Community Dialog
Robbins, Robert J.
Cochrane, Guy
Davies, Neil
Dawyndt, Peter
Kottmann, Renzo
Krishtalka, Leonard (Kris)
Morrison, Norman
Tuama, Éamonn Ó
San Gil, Inigo
Wooley, John
RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title_full RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title_fullStr RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title_full_unstemmed RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title_short RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011
title_sort rcn4gsc workshop report: modeling a testbed for managing data at the interface of biodiversity and (meta)genomics, april 2011
topic Community Dialog
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570803/
https://www.ncbi.nlm.nih.gov/pubmed/23451293
http://dx.doi.org/10.4056/sigs.3146509
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