Cargando…

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))

Owenweeksia hongkongensis Lau et al. 2005 is the sole member of the monospecific genus Owenweeksia in the family Cryomorphaceae, a poorly characterized family at the genome level thus far. This family comprises seven genera within the class Flavobacteria. Family members are known to be psychrotolera...

Descripción completa

Detalles Bibliográficos
Autores principales: Riedel, Thomas, Held, Brittany, Nolan, Matt, Lucas, Susan, Lapidus, Alla, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Rohde, Manfred, Tindall, Brian J., Detter, John C., Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570807/
https://www.ncbi.nlm.nih.gov/pubmed/23450211
http://dx.doi.org/10.4056/sigs.3296896
_version_ 1782259116079579136
author Riedel, Thomas
Held, Brittany
Nolan, Matt
Lucas, Susan
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Riedel, Thomas
Held, Brittany
Nolan, Matt
Lucas, Susan
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Riedel, Thomas
collection PubMed
description Owenweeksia hongkongensis Lau et al. 2005 is the sole member of the monospecific genus Owenweeksia in the family Cryomorphaceae, a poorly characterized family at the genome level thus far. This family comprises seven genera within the class Flavobacteria. Family members are known to be psychrotolerant, rod-shaped and orange pigmented (β-carotene), typical for Flavobacteria. For growth, seawater and complex organic nutrients are necessary. The genome of O. hongkongensis UST20020801(T) is only the second genome of a member of the family Cryomorphaceae whose sequence has been deciphered. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,000,057 bp long chromosome with its 3,518 protein-coding and 45 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Online
Article
Text
id pubmed-3570807
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-35708072013-02-28 Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)) Riedel, Thomas Held, Brittany Nolan, Matt Lucas, Susan Lapidus, Alla Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Detter, John C. Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Owenweeksia hongkongensis Lau et al. 2005 is the sole member of the monospecific genus Owenweeksia in the family Cryomorphaceae, a poorly characterized family at the genome level thus far. This family comprises seven genera within the class Flavobacteria. Family members are known to be psychrotolerant, rod-shaped and orange pigmented (β-carotene), typical for Flavobacteria. For growth, seawater and complex organic nutrients are necessary. The genome of O. hongkongensis UST20020801(T) is only the second genome of a member of the family Cryomorphaceae whose sequence has been deciphered. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,000,057 bp long chromosome with its 3,518 protein-coding and 45 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-10-10 /pmc/articles/PMC3570807/ /pubmed/23450211 http://dx.doi.org/10.4056/sigs.3296896 Text en Copyright © retained by original authors. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Riedel, Thomas
Held, Brittany
Nolan, Matt
Lucas, Susan
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title_full Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title_fullStr Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title_full_unstemmed Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title_short Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T))
title_sort genome sequence of the orange-pigmented seawater bacterium owenweeksia hongkongensis type strain (ust20020801(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570807/
https://www.ncbi.nlm.nih.gov/pubmed/23450211
http://dx.doi.org/10.4056/sigs.3296896
work_keys_str_mv AT riedelthomas genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT heldbrittany genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT nolanmatt genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT lucassusan genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT lapidusalla genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT ticehope genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT delriotijanaglavina genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT chengjanfang genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT hancliff genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT tapiaroxanne genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT goodwinlynnea genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT pitlucksam genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT liolioskonstantinos genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT mavromatiskonstantinos genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT paganiioanna genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT ivanovanatalia genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT mikhailovanatalia genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT patiamrita genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT chenamy genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT palaniappankrishna genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT rohdemanfred genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT tindallbrianj genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT detterjohnc genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT gokermarkus genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT woyketanja genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT bristowjames genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT eisenjonathana genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT markowitzvictor genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT hugenholtzphilip genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT klenkhanspeter genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t
AT kyrpidesnikosc genomesequenceoftheorangepigmentedseawaterbacteriumowenweeksiahongkongensistypestrainust20020801t