Cargando…

Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway

Bayesian network is one of the most successful graph models for representing the reactive oxygen species regulatory pathway. With the increasing number of microarray measurements, it is possible to construct the Bayesian network from microarray data directly. Although large numbers of Bayesian netwo...

Descripción completa

Detalles Bibliográficos
Autores principales: Hu, Liangdong, Wang, Limin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574104/
https://www.ncbi.nlm.nih.gov/pubmed/23457624
http://dx.doi.org/10.1371/journal.pone.0056832
_version_ 1782259566684143616
author Hu, Liangdong
Wang, Limin
author_facet Hu, Liangdong
Wang, Limin
author_sort Hu, Liangdong
collection PubMed
description Bayesian network is one of the most successful graph models for representing the reactive oxygen species regulatory pathway. With the increasing number of microarray measurements, it is possible to construct the Bayesian network from microarray data directly. Although large numbers of Bayesian network learning algorithms have been developed, when applying them to learn Bayesian networks from microarray data, the accuracies are low due to that the databases they used to learn Bayesian networks contain too few microarray data. In this paper, we propose a consensus Bayesian network which is constructed by combining Bayesian networks from relevant literatures and Bayesian networks learned from microarray data. It would have a higher accuracy than the Bayesian networks learned from one database. In the experiment, we validated the Bayesian network combination algorithm on several classic machine learning databases and used the consensus Bayesian network to model the [Image: see text]'s ROS pathway.
format Online
Article
Text
id pubmed-3574104
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-35741042013-03-01 Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway Hu, Liangdong Wang, Limin PLoS One Research Article Bayesian network is one of the most successful graph models for representing the reactive oxygen species regulatory pathway. With the increasing number of microarray measurements, it is possible to construct the Bayesian network from microarray data directly. Although large numbers of Bayesian network learning algorithms have been developed, when applying them to learn Bayesian networks from microarray data, the accuracies are low due to that the databases they used to learn Bayesian networks contain too few microarray data. In this paper, we propose a consensus Bayesian network which is constructed by combining Bayesian networks from relevant literatures and Bayesian networks learned from microarray data. It would have a higher accuracy than the Bayesian networks learned from one database. In the experiment, we validated the Bayesian network combination algorithm on several classic machine learning databases and used the consensus Bayesian network to model the [Image: see text]'s ROS pathway. Public Library of Science 2013-02-15 /pmc/articles/PMC3574104/ /pubmed/23457624 http://dx.doi.org/10.1371/journal.pone.0056832 Text en © 2013 Hu and Wang http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Hu, Liangdong
Wang, Limin
Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title_full Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title_fullStr Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title_full_unstemmed Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title_short Using Consensus Bayesian Network to Model the Reactive Oxygen Species Regulatory Pathway
title_sort using consensus bayesian network to model the reactive oxygen species regulatory pathway
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574104/
https://www.ncbi.nlm.nih.gov/pubmed/23457624
http://dx.doi.org/10.1371/journal.pone.0056832
work_keys_str_mv AT huliangdong usingconsensusbayesiannetworktomodelthereactiveoxygenspeciesregulatorypathway
AT wanglimin usingconsensusbayesiannetworktomodelthereactiveoxygenspeciesregulatorypathway