A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens

In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 4...

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Autores principales: Jairin, Jirapong, Kobayashi, Tetsuya, Yamagata, Yoshiyuki, Sanada-Morimura, Sachiyo, Mori, Kazuki, Tashiro, Kosuke, Kuhara, Satoru, Kuwazaki, Seigo, Urio, Masahiro, Suetsugu, Yoshitaka, Yamamoto, Kimiko, Matsumura, Masaya, Yasui, Hideshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Full Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3576655/
https://www.ncbi.nlm.nih.gov/pubmed/23204257
http://dx.doi.org/10.1093/dnares/dss030
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author Jairin, Jirapong
Kobayashi, Tetsuya
Yamagata, Yoshiyuki
Sanada-Morimura, Sachiyo
Mori, Kazuki
Tashiro, Kosuke
Kuhara, Satoru
Kuwazaki, Seigo
Urio, Masahiro
Suetsugu, Yoshitaka
Yamamoto, Kimiko
Matsumura, Masaya
Yasui, Hideshi
author_facet Jairin, Jirapong
Kobayashi, Tetsuya
Yamagata, Yoshiyuki
Sanada-Morimura, Sachiyo
Mori, Kazuki
Tashiro, Kosuke
Kuhara, Satoru
Kuwazaki, Seigo
Urio, Masahiro
Suetsugu, Yoshitaka
Yamamoto, Kimiko
Matsumura, Masaya
Yasui, Hideshi
author_sort Jairin, Jirapong
collection PubMed
description In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.
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spelling pubmed-35766552013-02-20 A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens Jairin, Jirapong Kobayashi, Tetsuya Yamagata, Yoshiyuki Sanada-Morimura, Sachiyo Mori, Kazuki Tashiro, Kosuke Kuhara, Satoru Kuwazaki, Seigo Urio, Masahiro Suetsugu, Yoshitaka Yamamoto, Kimiko Matsumura, Masaya Yasui, Hideshi DNA Res Full Papers In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH. Oxford University Press 2013-02 2012-11-29 /pmc/articles/PMC3576655/ /pubmed/23204257 http://dx.doi.org/10.1093/dnares/dss030 Text en © The Author 2012. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Jairin, Jirapong
Kobayashi, Tetsuya
Yamagata, Yoshiyuki
Sanada-Morimura, Sachiyo
Mori, Kazuki
Tashiro, Kosuke
Kuhara, Satoru
Kuwazaki, Seigo
Urio, Masahiro
Suetsugu, Yoshitaka
Yamamoto, Kimiko
Matsumura, Masaya
Yasui, Hideshi
A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title_full A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title_fullStr A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title_full_unstemmed A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title_short A Simple Sequence Repeat- and Single-Nucleotide Polymorphism-Based Genetic Linkage Map of the Brown Planthopper, Nilaparvata lugens
title_sort simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, nilaparvata lugens
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3576655/
https://www.ncbi.nlm.nih.gov/pubmed/23204257
http://dx.doi.org/10.1093/dnares/dss030
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