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Strategies for MCR image analysis of large hyperspectral data-sets

Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individua...

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Detalles Bibliográficos
Autores principales: Scurr, David J, Hook, Andrew L, Burley, Jonathan A, Williams, Philip M, Anderson, Daniel G, Langer, Robert C, Davies, Martyn C, Alexander, Morgan R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579489/
https://www.ncbi.nlm.nih.gov/pubmed/23450109
http://dx.doi.org/10.1002/sia.5040
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author Scurr, David J
Hook, Andrew L
Burley, Jonathan A
Williams, Philip M
Anderson, Daniel G
Langer, Robert C
Davies, Martyn C
Alexander, Morgan R
author_facet Scurr, David J
Hook, Andrew L
Burley, Jonathan A
Williams, Philip M
Anderson, Daniel G
Langer, Robert C
Davies, Martyn C
Alexander, Morgan R
author_sort Scurr, David J
collection PubMed
description Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individual microarray spots. Rather than analysing the data individually, the data-sets are collated and analysed as a single large data-set. Desktop computing is not a practical method for undertaking MCR analysis of such large data-sets due to the constraints of memory and computational overhead. Here, a distributed memory High-Performance Computing facility (HPC) is used. Similar to what is achieved using MCR analysis of individual samples, the results from this consolidated data-set allow clear identification of the substrate material; furthermore, specific chemistries common to different spots are also identified. The application of the HPC facility to the MCR analysis of ToF-SIMS hyperspectral data-sets demonstrates a potential methodology for the analysis of macro-scale data without compromising spatial resolution (data ‘binning’). Copyright © 2012 John Wiley & Sons, Ltd.
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spelling pubmed-35794892013-02-26 Strategies for MCR image analysis of large hyperspectral data-sets Scurr, David J Hook, Andrew L Burley, Jonathan A Williams, Philip M Anderson, Daniel G Langer, Robert C Davies, Martyn C Alexander, Morgan R Surf Interface Anal Sims Proceedings Papers Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individual microarray spots. Rather than analysing the data individually, the data-sets are collated and analysed as a single large data-set. Desktop computing is not a practical method for undertaking MCR analysis of such large data-sets due to the constraints of memory and computational overhead. Here, a distributed memory High-Performance Computing facility (HPC) is used. Similar to what is achieved using MCR analysis of individual samples, the results from this consolidated data-set allow clear identification of the substrate material; furthermore, specific chemistries common to different spots are also identified. The application of the HPC facility to the MCR analysis of ToF-SIMS hyperspectral data-sets demonstrates a potential methodology for the analysis of macro-scale data without compromising spatial resolution (data ‘binning’). Copyright © 2012 John Wiley & Sons, Ltd. Blackwell Publishing Ltd 2013-01 2012-05-22 /pmc/articles/PMC3579489/ /pubmed/23450109 http://dx.doi.org/10.1002/sia.5040 Text en Copyright © 2012 John Wiley & Sons, Ltd. http://creativecommons.org/licenses/by/2.5/ Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation.
spellingShingle Sims Proceedings Papers
Scurr, David J
Hook, Andrew L
Burley, Jonathan A
Williams, Philip M
Anderson, Daniel G
Langer, Robert C
Davies, Martyn C
Alexander, Morgan R
Strategies for MCR image analysis of large hyperspectral data-sets
title Strategies for MCR image analysis of large hyperspectral data-sets
title_full Strategies for MCR image analysis of large hyperspectral data-sets
title_fullStr Strategies for MCR image analysis of large hyperspectral data-sets
title_full_unstemmed Strategies for MCR image analysis of large hyperspectral data-sets
title_short Strategies for MCR image analysis of large hyperspectral data-sets
title_sort strategies for mcr image analysis of large hyperspectral data-sets
topic Sims Proceedings Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579489/
https://www.ncbi.nlm.nih.gov/pubmed/23450109
http://dx.doi.org/10.1002/sia.5040
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