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Strategies for MCR image analysis of large hyperspectral data-sets
Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individua...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579489/ https://www.ncbi.nlm.nih.gov/pubmed/23450109 http://dx.doi.org/10.1002/sia.5040 |
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author | Scurr, David J Hook, Andrew L Burley, Jonathan A Williams, Philip M Anderson, Daniel G Langer, Robert C Davies, Martyn C Alexander, Morgan R |
author_facet | Scurr, David J Hook, Andrew L Burley, Jonathan A Williams, Philip M Anderson, Daniel G Langer, Robert C Davies, Martyn C Alexander, Morgan R |
author_sort | Scurr, David J |
collection | PubMed |
description | Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individual microarray spots. Rather than analysing the data individually, the data-sets are collated and analysed as a single large data-set. Desktop computing is not a practical method for undertaking MCR analysis of such large data-sets due to the constraints of memory and computational overhead. Here, a distributed memory High-Performance Computing facility (HPC) is used. Similar to what is achieved using MCR analysis of individual samples, the results from this consolidated data-set allow clear identification of the substrate material; furthermore, specific chemistries common to different spots are also identified. The application of the HPC facility to the MCR analysis of ToF-SIMS hyperspectral data-sets demonstrates a potential methodology for the analysis of macro-scale data without compromising spatial resolution (data ‘binning’). Copyright © 2012 John Wiley & Sons, Ltd. |
format | Online Article Text |
id | pubmed-3579489 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-35794892013-02-26 Strategies for MCR image analysis of large hyperspectral data-sets Scurr, David J Hook, Andrew L Burley, Jonathan A Williams, Philip M Anderson, Daniel G Langer, Robert C Davies, Martyn C Alexander, Morgan R Surf Interface Anal Sims Proceedings Papers Polymer microarrays are a key enabling technology for high throughput materials discovery. In this study, multivariate image analysis, specifically multivariate curve resolution (MCR), is applied to the hyperspectral time of flight secondary ion mass spectroscopy (ToF-SIMS) data from eight individual microarray spots. Rather than analysing the data individually, the data-sets are collated and analysed as a single large data-set. Desktop computing is not a practical method for undertaking MCR analysis of such large data-sets due to the constraints of memory and computational overhead. Here, a distributed memory High-Performance Computing facility (HPC) is used. Similar to what is achieved using MCR analysis of individual samples, the results from this consolidated data-set allow clear identification of the substrate material; furthermore, specific chemistries common to different spots are also identified. The application of the HPC facility to the MCR analysis of ToF-SIMS hyperspectral data-sets demonstrates a potential methodology for the analysis of macro-scale data without compromising spatial resolution (data ‘binning’). Copyright © 2012 John Wiley & Sons, Ltd. Blackwell Publishing Ltd 2013-01 2012-05-22 /pmc/articles/PMC3579489/ /pubmed/23450109 http://dx.doi.org/10.1002/sia.5040 Text en Copyright © 2012 John Wiley & Sons, Ltd. http://creativecommons.org/licenses/by/2.5/ Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation. |
spellingShingle | Sims Proceedings Papers Scurr, David J Hook, Andrew L Burley, Jonathan A Williams, Philip M Anderson, Daniel G Langer, Robert C Davies, Martyn C Alexander, Morgan R Strategies for MCR image analysis of large hyperspectral data-sets |
title | Strategies for MCR image analysis of large hyperspectral
data-sets |
title_full | Strategies for MCR image analysis of large hyperspectral
data-sets |
title_fullStr | Strategies for MCR image analysis of large hyperspectral
data-sets |
title_full_unstemmed | Strategies for MCR image analysis of large hyperspectral
data-sets |
title_short | Strategies for MCR image analysis of large hyperspectral
data-sets |
title_sort | strategies for mcr image analysis of large hyperspectral
data-sets |
topic | Sims Proceedings Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579489/ https://www.ncbi.nlm.nih.gov/pubmed/23450109 http://dx.doi.org/10.1002/sia.5040 |
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