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InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor

Genomics datasets are increasingly useful for gaining biomedical insights, with adoption in the clinic underway. However, multiple hurdles related to data management stand in the way of their efficient large-scale utilization. The solution proposed is a web-based data storage hub. Having clear focus...

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Autores principales: Coletta, Alain, Molter, Colin, Duqué, Robin, Steenhoff, David, Taminau, Jonatan, de Schaetzen, Virginie, Meganck, Stijn, Lazar, Cosmin, Venet, David, Detours, Vincent, Nowé, Ann, Bersini, Hugues, Weiss Solís, David Y
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3580496/
https://www.ncbi.nlm.nih.gov/pubmed/23158523
http://dx.doi.org/10.1186/gb-2012-13-11-r104
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author Coletta, Alain
Molter, Colin
Duqué, Robin
Steenhoff, David
Taminau, Jonatan
de Schaetzen, Virginie
Meganck, Stijn
Lazar, Cosmin
Venet, David
Detours, Vincent
Nowé, Ann
Bersini, Hugues
Weiss Solís, David Y
author_facet Coletta, Alain
Molter, Colin
Duqué, Robin
Steenhoff, David
Taminau, Jonatan
de Schaetzen, Virginie
Meganck, Stijn
Lazar, Cosmin
Venet, David
Detours, Vincent
Nowé, Ann
Bersini, Hugues
Weiss Solís, David Y
author_sort Coletta, Alain
collection PubMed
description Genomics datasets are increasingly useful for gaining biomedical insights, with adoption in the clinic underway. However, multiple hurdles related to data management stand in the way of their efficient large-scale utilization. The solution proposed is a web-based data storage hub. Having clear focus, flexibility and adaptability, InSilico DB seamlessly connects genomics dataset repositories to state-of-the-art and free GUI and command-line data analysis tools. The InSilico DB platform is a powerful collaborative environment, with advanced capabilities for biocuration, dataset sharing, and dataset subsetting and combination. InSilico DB is available from https://insilicodb.org.
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spelling pubmed-35804962013-02-26 InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor Coletta, Alain Molter, Colin Duqué, Robin Steenhoff, David Taminau, Jonatan de Schaetzen, Virginie Meganck, Stijn Lazar, Cosmin Venet, David Detours, Vincent Nowé, Ann Bersini, Hugues Weiss Solís, David Y Genome Biol Software Genomics datasets are increasingly useful for gaining biomedical insights, with adoption in the clinic underway. However, multiple hurdles related to data management stand in the way of their efficient large-scale utilization. The solution proposed is a web-based data storage hub. Having clear focus, flexibility and adaptability, InSilico DB seamlessly connects genomics dataset repositories to state-of-the-art and free GUI and command-line data analysis tools. The InSilico DB platform is a powerful collaborative environment, with advanced capabilities for biocuration, dataset sharing, and dataset subsetting and combination. InSilico DB is available from https://insilicodb.org. BioMed Central 2012 2012-11-18 /pmc/articles/PMC3580496/ /pubmed/23158523 http://dx.doi.org/10.1186/gb-2012-13-11-r104 Text en Copyright ©2012 Coletta et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Coletta, Alain
Molter, Colin
Duqué, Robin
Steenhoff, David
Taminau, Jonatan
de Schaetzen, Virginie
Meganck, Stijn
Lazar, Cosmin
Venet, David
Detours, Vincent
Nowé, Ann
Bersini, Hugues
Weiss Solís, David Y
InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title_full InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title_fullStr InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title_full_unstemmed InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title_short InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
title_sort insilico db genomic datasets hub: an efficient starting point for analyzing genome-wide studies in genepattern, integrative genomics viewer, and r/bioconductor
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3580496/
https://www.ncbi.nlm.nih.gov/pubmed/23158523
http://dx.doi.org/10.1186/gb-2012-13-11-r104
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