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The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. I...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581485/ https://www.ncbi.nlm.nih.gov/pubmed/23451277 http://dx.doi.org/10.1371/journal.pone.0057848 |
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author | Eberhardt, Ruth Y. Bartholdson, S. Josefin Punta, Marco Bateman, Alex |
author_facet | Eberhardt, Ruth Y. Bartholdson, S. Josefin Punta, Marco Bateman, Alex |
author_sort | Eberhardt, Ruth Y. |
collection | PubMed |
description | We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. It's predominantly C-terminal location, co-occurrence with numerous other domains and short size is reminiscent of the Gram-positive anchor motif, however it is present in a much wider range of species. We suggest several hypotheses about the function of SHOCT, including oligomerisation and nucleic acid binding. Our initial experiments do not support its role as an oligomerisation domain. |
format | Online Article Text |
id | pubmed-3581485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35814852013-02-28 The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms Eberhardt, Ruth Y. Bartholdson, S. Josefin Punta, Marco Bateman, Alex PLoS One Research Article We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. It's predominantly C-terminal location, co-occurrence with numerous other domains and short size is reminiscent of the Gram-positive anchor motif, however it is present in a much wider range of species. We suggest several hypotheses about the function of SHOCT, including oligomerisation and nucleic acid binding. Our initial experiments do not support its role as an oligomerisation domain. Public Library of Science 2013-02-25 /pmc/articles/PMC3581485/ /pubmed/23451277 http://dx.doi.org/10.1371/journal.pone.0057848 Text en © 2013 Eberhardt et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Eberhardt, Ruth Y. Bartholdson, S. Josefin Punta, Marco Bateman, Alex The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title | The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title_full | The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title_fullStr | The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title_full_unstemmed | The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title_short | The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms |
title_sort | shoct domain: a widespread domain under-represented in model organisms |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581485/ https://www.ncbi.nlm.nih.gov/pubmed/23451277 http://dx.doi.org/10.1371/journal.pone.0057848 |
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