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The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms

We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. I...

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Detalles Bibliográficos
Autores principales: Eberhardt, Ruth Y., Bartholdson, S. Josefin, Punta, Marco, Bateman, Alex
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581485/
https://www.ncbi.nlm.nih.gov/pubmed/23451277
http://dx.doi.org/10.1371/journal.pone.0057848
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author Eberhardt, Ruth Y.
Bartholdson, S. Josefin
Punta, Marco
Bateman, Alex
author_facet Eberhardt, Ruth Y.
Bartholdson, S. Josefin
Punta, Marco
Bateman, Alex
author_sort Eberhardt, Ruth Y.
collection PubMed
description We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. It's predominantly C-terminal location, co-occurrence with numerous other domains and short size is reminiscent of the Gram-positive anchor motif, however it is present in a much wider range of species. We suggest several hypotheses about the function of SHOCT, including oligomerisation and nucleic acid binding. Our initial experiments do not support its role as an oligomerisation domain.
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spelling pubmed-35814852013-02-28 The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms Eberhardt, Ruth Y. Bartholdson, S. Josefin Punta, Marco Bateman, Alex PLoS One Research Article We have identified a new protein domain, which we have named the SHOCT domain (Short C-terminal domain). This domain is widespread in bacteria with over a thousand examples. But we found it is missing from the most commonly studied model organisms, despite being present in closely related species. It's predominantly C-terminal location, co-occurrence with numerous other domains and short size is reminiscent of the Gram-positive anchor motif, however it is present in a much wider range of species. We suggest several hypotheses about the function of SHOCT, including oligomerisation and nucleic acid binding. Our initial experiments do not support its role as an oligomerisation domain. Public Library of Science 2013-02-25 /pmc/articles/PMC3581485/ /pubmed/23451277 http://dx.doi.org/10.1371/journal.pone.0057848 Text en © 2013 Eberhardt et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Eberhardt, Ruth Y.
Bartholdson, S. Josefin
Punta, Marco
Bateman, Alex
The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title_full The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title_fullStr The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title_full_unstemmed The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title_short The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms
title_sort shoct domain: a widespread domain under-represented in model organisms
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581485/
https://www.ncbi.nlm.nih.gov/pubmed/23451277
http://dx.doi.org/10.1371/journal.pone.0057848
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