Cargando…

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy

Genomic selection, a breeding method that promises to accelerate rates of genetic gain, requires dense, genome-wide marker data. Genotyping-by-sequencing can generate a large number of de novo markers. However, without a reference genome, these markers are unordered and typically have a large propor...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rutkoski, Jessica E., Poland, Jesse, Jannink, Jean-Luc, Sorrells, Mark E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Genetics Society of America 2013
Materias:	Genomic Selection
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583451/ https://www.ncbi.nlm.nih.gov/pubmed/23449944 http://dx.doi.org/10.1534/g3.112.005363

Ejemplares similares

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity
por: Heslot, Nicolas, et al.
Publicado: (2013)

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model
por: Lopez-Cruz, Marco, et al.
Publicado: (2015)

Training set optimization under population structure in genomic selection
por: Isidro, Julio, et al.
Publicado: (2014)

Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties
por: Wolfe, Marnin D., et al.
Publicado: (2016)

Accuracy of Estimation of Genomic Breeding Values in Pigs Using Low-Density Genotypes and Imputation
por: Badke, Yvonne M., et al.
Publicado: (2014)

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon
por: Tsai, Hsin-Yuan, et al.
Publicado: (2017)

Prediction of Subgenome Additive and Interaction Effects in Allohexaploid Wheat
por: Santantonio, Nicholas, et al.
Publicado: (2018)

Improving Genomic Prediction in Cassava Field Experiments by Accounting for Interplot Competition
por: Elias, Ani A., et al.
Publicado: (2018)

Improving Genomic Prediction in Cassava Field Experiments Using Spatial Analysis
por: Elias, Ani A., et al.
Publicado: (2017)

A Genomic Selection Index Applied to Simulated and Real Data
por: Ceron-Rojas, J. Jesus, et al.
Publicado: (2015)

Increased Genomic Prediction Accuracy in Wheat Breeding Through Spatial Adjustment of Field Trial Data
por: Lado, Bettina, et al.
Publicado: (2013)

Optimising Genomic Selection in Wheat: Effect of Marker Density, Population Size and Population Structure on Prediction Accuracy
por: Norman, Adam, et al.
Publicado: (2018)

Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat
por: Krause, Margaret R., et al.
Publicado: (2019)

Genomic Selection in Preliminary Yield Trials in a Winter Wheat Breeding Program
por: Belamkar, Vikas, et al.
Publicado: (2018)

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
por: Poland, Jesse A., et al.
Publicado: (2012)

Persistency of Prediction Accuracy and Genetic Gain in Synthetic Populations Under Recurrent Genomic Selection
por: Müller, Dominik, et al.
Publicado: (2017)

A Genomic Bayesian Multi-trait and Multi-environment Model
por: Montesinos-López, Osval A., et al.
Publicado: (2016)

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing
por: Crossa, José, et al.
Publicado: (2013)

Two metrics on rooted unordered trees with labels
por: Wang, Yue
Publicado: (2022)

Response to Early Generation Genomic Selection for Yield in Wheat
por: Bonnett, David, et al.
Publicado: (2022)

Genomic Prediction Accuracy for Resistance Against Piscirickettsia salmonis in Farmed Rainbow Trout
por: Yoshida, Grazyella M., et al.
Publicado: (2017)

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat
por: Rutkoski, Jessica, et al.
Publicado: (2016)

Wheat quality improvement at CIMMYT and the use of genomic selection on it
por: Guzman, Carlos, et al.
Publicado: (2016)

Unrooted unordered homeomorphic subtree alignment of RNA trees
por: Milo, Nimrod, et al.
Publicado: (2013)

Optimizing Low-Cost Genotyping and Imputation Strategies for Genomic Selection in Atlantic Salmon
por: Tsairidou, Smaragda, et al.
Publicado: (2019)

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs
por: Hidalgo, André M., et al.
Publicado: (2015)

Influence of Outliers on Accuracy Estimation in Genomic Prediction in Plant Breeding
por: Estaghvirou, Sidi Boubacar Ould, et al.
Publicado: (2014)

Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
por: Kainer, David, et al.
Publicado: (2018)

Genomic Prediction Within and Across Biparental Families: Means and Variances of Prediction Accuracy and Usefulness of Deterministic Equations
por: Schopp, Pascal, et al.
Publicado: (2017)

Selection on Expected Maximum Haploid Breeding Values Can Increase Genetic Gain in Recurrent Genomic Selection
por: Müller, Dominik, et al.
Publicado: (2018)

Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium
por: Ramstein, Guillaume P., et al.
Publicado: (2016)

Genomic prediction of unordered categorical traits: an application to subpopulation assignment in German Warmblood horses
por: Heuer, Claas, et al.
Publicado: (2016)

If it ain't broke, don't fix it: evaluating the effect of increased recombination on response to selection for wheat breeding
por: Taagen, Ella, et al.
Publicado: (2022)

Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix
por: Zhang, Zhe, et al.
Publicado: (2015)

Genomic Selection in Multi-environment Crop Trials
por: Oakey, Helena, et al.
Publicado: (2016)

On factor associated with the unordered phase of $\lambda$ - model on a Cayley tree
por: Mukhamedov, F
Publicado: (2002)

A Bayesian Decision Theory Approach for Genomic Selection
por: Villar-Hernández, Bartolo de Jesús, et al.
Publicado: (2018)

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon
por: Robledo, Diego, et al.
Publicado: (2018)

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies
por: Hao, Ke, et al.
Publicado: (2009)

A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat
por: Santantonio, Nicholas, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_8tsm84813o5t8koqimsi7o95cm