Cargando…
Measuring Information-Transfer Delays
In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of millise...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585400/ https://www.ncbi.nlm.nih.gov/pubmed/23468850 http://dx.doi.org/10.1371/journal.pone.0055809 |
_version_ | 1782261164484329472 |
---|---|
author | Wibral, Michael Pampu, Nicolae Priesemann, Viola Siebenhühner, Felix Seiwert, Hannes Lindner, Michael Lizier, Joseph T. Vicente, Raul |
author_facet | Wibral, Michael Pampu, Nicolae Priesemann, Viola Siebenhühner, Felix Seiwert, Hannes Lindner, Michael Lizier, Joseph T. Vicente, Raul |
author_sort | Wibral, Michael |
collection | PubMed |
description | In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of milliseconds, adding an intrinsic component to any timing-based processing of information. Inferring neural interaction delays is thus needed to interpret the information transfer revealed by any analysis of directed interactions across brain structures. However, a robust estimation of interaction delays from neural activity faces several challenges if modeling assumptions on interaction mechanisms are wrong or cannot be made. Here, we propose a robust estimator for neuronal interaction delays rooted in an information-theoretic framework, which allows a model-free exploration of interactions. In particular, we extend transfer entropy to account for delayed source-target interactions, while crucially retaining the conditioning on the embedded target state at the immediately previous time step. We prove that this particular extension is indeed guaranteed to identify interaction delays between two coupled systems and is the only relevant option in keeping with Wiener’s principle of causality. We demonstrate the performance of our approach in detecting interaction delays on finite data by numerical simulations of stochastic and deterministic processes, as well as on local field potential recordings. We also show the ability of the extended transfer entropy to detect the presence of multiple delays, as well as feedback loops. While evaluated on neuroscience data, we expect the estimator to be useful in other fields dealing with network dynamics. |
format | Online Article Text |
id | pubmed-3585400 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35854002013-03-06 Measuring Information-Transfer Delays Wibral, Michael Pampu, Nicolae Priesemann, Viola Siebenhühner, Felix Seiwert, Hannes Lindner, Michael Lizier, Joseph T. Vicente, Raul PLoS One Research Article In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of milliseconds, adding an intrinsic component to any timing-based processing of information. Inferring neural interaction delays is thus needed to interpret the information transfer revealed by any analysis of directed interactions across brain structures. However, a robust estimation of interaction delays from neural activity faces several challenges if modeling assumptions on interaction mechanisms are wrong or cannot be made. Here, we propose a robust estimator for neuronal interaction delays rooted in an information-theoretic framework, which allows a model-free exploration of interactions. In particular, we extend transfer entropy to account for delayed source-target interactions, while crucially retaining the conditioning on the embedded target state at the immediately previous time step. We prove that this particular extension is indeed guaranteed to identify interaction delays between two coupled systems and is the only relevant option in keeping with Wiener’s principle of causality. We demonstrate the performance of our approach in detecting interaction delays on finite data by numerical simulations of stochastic and deterministic processes, as well as on local field potential recordings. We also show the ability of the extended transfer entropy to detect the presence of multiple delays, as well as feedback loops. While evaluated on neuroscience data, we expect the estimator to be useful in other fields dealing with network dynamics. Public Library of Science 2013-02-28 /pmc/articles/PMC3585400/ /pubmed/23468850 http://dx.doi.org/10.1371/journal.pone.0055809 Text en © 2013 Wibral et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Wibral, Michael Pampu, Nicolae Priesemann, Viola Siebenhühner, Felix Seiwert, Hannes Lindner, Michael Lizier, Joseph T. Vicente, Raul Measuring Information-Transfer Delays |
title | Measuring Information-Transfer Delays |
title_full | Measuring Information-Transfer Delays |
title_fullStr | Measuring Information-Transfer Delays |
title_full_unstemmed | Measuring Information-Transfer Delays |
title_short | Measuring Information-Transfer Delays |
title_sort | measuring information-transfer delays |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585400/ https://www.ncbi.nlm.nih.gov/pubmed/23468850 http://dx.doi.org/10.1371/journal.pone.0055809 |
work_keys_str_mv | AT wibralmichael measuringinformationtransferdelays AT pampunicolae measuringinformationtransferdelays AT priesemannviola measuringinformationtransferdelays AT siebenhuhnerfelix measuringinformationtransferdelays AT seiwerthannes measuringinformationtransferdelays AT lindnermichael measuringinformationtransferdelays AT lizierjosepht measuringinformationtransferdelays AT vicenteraul measuringinformationtransferdelays |