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Measuring Information-Transfer Delays

In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of millise...

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Autores principales: Wibral, Michael, Pampu, Nicolae, Priesemann, Viola, Siebenhühner, Felix, Seiwert, Hannes, Lindner, Michael, Lizier, Joseph T., Vicente, Raul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585400/
https://www.ncbi.nlm.nih.gov/pubmed/23468850
http://dx.doi.org/10.1371/journal.pone.0055809
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author Wibral, Michael
Pampu, Nicolae
Priesemann, Viola
Siebenhühner, Felix
Seiwert, Hannes
Lindner, Michael
Lizier, Joseph T.
Vicente, Raul
author_facet Wibral, Michael
Pampu, Nicolae
Priesemann, Viola
Siebenhühner, Felix
Seiwert, Hannes
Lindner, Michael
Lizier, Joseph T.
Vicente, Raul
author_sort Wibral, Michael
collection PubMed
description In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of milliseconds, adding an intrinsic component to any timing-based processing of information. Inferring neural interaction delays is thus needed to interpret the information transfer revealed by any analysis of directed interactions across brain structures. However, a robust estimation of interaction delays from neural activity faces several challenges if modeling assumptions on interaction mechanisms are wrong or cannot be made. Here, we propose a robust estimator for neuronal interaction delays rooted in an information-theoretic framework, which allows a model-free exploration of interactions. In particular, we extend transfer entropy to account for delayed source-target interactions, while crucially retaining the conditioning on the embedded target state at the immediately previous time step. We prove that this particular extension is indeed guaranteed to identify interaction delays between two coupled systems and is the only relevant option in keeping with Wiener’s principle of causality. We demonstrate the performance of our approach in detecting interaction delays on finite data by numerical simulations of stochastic and deterministic processes, as well as on local field potential recordings. We also show the ability of the extended transfer entropy to detect the presence of multiple delays, as well as feedback loops. While evaluated on neuroscience data, we expect the estimator to be useful in other fields dealing with network dynamics.
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spelling pubmed-35854002013-03-06 Measuring Information-Transfer Delays Wibral, Michael Pampu, Nicolae Priesemann, Viola Siebenhühner, Felix Seiwert, Hannes Lindner, Michael Lizier, Joseph T. Vicente, Raul PLoS One Research Article In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of milliseconds, adding an intrinsic component to any timing-based processing of information. Inferring neural interaction delays is thus needed to interpret the information transfer revealed by any analysis of directed interactions across brain structures. However, a robust estimation of interaction delays from neural activity faces several challenges if modeling assumptions on interaction mechanisms are wrong or cannot be made. Here, we propose a robust estimator for neuronal interaction delays rooted in an information-theoretic framework, which allows a model-free exploration of interactions. In particular, we extend transfer entropy to account for delayed source-target interactions, while crucially retaining the conditioning on the embedded target state at the immediately previous time step. We prove that this particular extension is indeed guaranteed to identify interaction delays between two coupled systems and is the only relevant option in keeping with Wiener’s principle of causality. We demonstrate the performance of our approach in detecting interaction delays on finite data by numerical simulations of stochastic and deterministic processes, as well as on local field potential recordings. We also show the ability of the extended transfer entropy to detect the presence of multiple delays, as well as feedback loops. While evaluated on neuroscience data, we expect the estimator to be useful in other fields dealing with network dynamics. Public Library of Science 2013-02-28 /pmc/articles/PMC3585400/ /pubmed/23468850 http://dx.doi.org/10.1371/journal.pone.0055809 Text en © 2013 Wibral et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wibral, Michael
Pampu, Nicolae
Priesemann, Viola
Siebenhühner, Felix
Seiwert, Hannes
Lindner, Michael
Lizier, Joseph T.
Vicente, Raul
Measuring Information-Transfer Delays
title Measuring Information-Transfer Delays
title_full Measuring Information-Transfer Delays
title_fullStr Measuring Information-Transfer Delays
title_full_unstemmed Measuring Information-Transfer Delays
title_short Measuring Information-Transfer Delays
title_sort measuring information-transfer delays
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585400/
https://www.ncbi.nlm.nih.gov/pubmed/23468850
http://dx.doi.org/10.1371/journal.pone.0055809
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