Cargando…

Genome Wide Allele Frequency Fingerprints (GWAFFs) of Populations via Genotyping by Sequencing

Genotyping-by-Sequencing (GBS) is an excellent tool for characterising genetic variation between plant genomes. To date, its use has been reported only for genotyping of single individuals. However, there are many applications where resolving allele frequencies within populations on a genome-wide sc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Byrne, Stephen, Czaban, Adrian, Studer, Bruno, Panitz, Frank, Bendixen, Christian, Asp, Torben
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587605/ https://www.ncbi.nlm.nih.gov/pubmed/23469194 http://dx.doi.org/10.1371/journal.pone.0057438

Ejemplares similares

The genome and transcriptome of perennial ryegrass mitochondria
por: Islam, Md Shofiqul, et al.
Publicado: (2013)

A transcriptome map of perennial ryegrass (Lolium perenne L.)
por: Studer, Bruno, et al.
Publicado: (2012)

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation
por: Czaban, Adrian, et al.
Publicado: (2015)

Estimating genomic heritabilities at the level of family-pool samples of perennial ryegrass using genotyping-by-sequencing
por: Ashraf, Bilal Hassan, et al.
Publicado: (2015)

Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.)
por: Knorst, Verena, et al.
Publicado: (2018)

Association studies using family pools of outcrossing crops based on allele-frequency estimates from DNA sequencing
por: Ashraf, Bilal H., et al.
Publicado: (2014)

Using a Candidate Gene-Based Genetic Linkage Map to Identify QTL for Winter Survival in Perennial Ryegrass
por: Paina, Cristiana, et al.
Publicado: (2016)

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping
por: Zhan, Bujie, et al.
Publicado: (2011)

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
por: Belova, Tatiana, et al.
Publicado: (2013)

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing
por: Sverrisdóttir, Elsa, et al.
Publicado: (2017)

Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
por: Asp, Torben, et al.
Publicado: (2007)

Genomic Prediction in Tetraploid Ryegrass Using Allele Frequencies Based on Genotyping by Sequencing
por: Guo, Xiangyu, et al.
Publicado: (2018)

Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes
por: Das, Ashutosh, et al.
Publicado: (2015)

Draft Genome Sequence of Clostridium tyrobutyricum Strain DIVETGP, Isolated from Cow’s Milk for Grana Padano Production
por: Soggiu, Alessio, et al.
Publicado: (2015)

Optimized Use of Low-Depth Genotyping-by-Sequencing for Genomic Prediction Among Multi-Parental Family Pools and Single Plants in Perennial Ryegrass (Lolium perenne L.)
por: Cericola, Fabio, et al.
Publicado: (2018)

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing
por: Binladen, Jonas, et al.
Publicado: (2007)

Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
por: Abeynayake, Shamila Weerakoon, et al.
Publicado: (2015)

ABO allele-level frequency estimation based on population-scale genotyping by next generation sequencing
por: Lang, Kathrin, et al.
Publicado: (2016)

Estimation of allele frequency and association mapping using next-generation sequencing data
por: Kim, Su Yeon, et al.
Publicado: (2011)

Genotypic and allelic frequencies of MDR1 gene in dogs in Italy
por: Marelli, Stefano Paolo, et al.
Publicado: (2020)

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)
por: Veeckman, Elisabeth, et al.
Publicado: (2019)

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
por: Hornshøj, Henrik, et al.
Publicado: (2009)

In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.)
por: Sykes, Timothy, et al.
Publicado: (2016)

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
por: Nielsen, Rasmus, et al.
Publicado: (2012)

Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data
por: Waples, Ryan K., et al.
Publicado: (2019)

Identification of New Alleles and the Determination of Alleles and Genotypes Frequencies at the CYP2D6 Gene in Emiratis
por: Qumsieh, Rula Y., et al.
Publicado: (2011)

Human Neutrophil Antigen Genotype and Allele Frequencies in Iranian Blood Donors
por: Esmaeili, Behnaz, et al.
Publicado: (2022)

Reconstructing SNP allele and genotype frequencies from GWAS summary statistics
por: Yang, Zhiyu, et al.
Publicado: (2022)

Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies
por: Gong, Binsheng, et al.
Publicado: (2022)

De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy
por: Farrell, Jacqueline D., et al.
Publicado: (2014)

Vernalization Mediated Changes in the Lolium perenne Transcriptome
por: Paina, Cristiana, et al.
Publicado: (2014)

A high-throughput method for genotyping S-RNase alleles in apple
por: Larsen, Bjarne, et al.
Publicado: (2016)

Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues
por: Hornshøj, Henrik, et al.
Publicado: (2007)

Confirming putative variants at ≤ 5% allele frequency using allele enrichment and Sanger sequencing
por: Yan, Yan Helen, et al.
Publicado: (2021)

Genome-wide mapping and allelic fingerprinting provide insights into the genetics of resistance to wheat stripe rust in India, Kenya and Mexico
por: Juliana, Philomin, et al.
Publicado: (2020)

The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry
por: Byrne, Stephen L., et al.
Publicado: (2017)

Accuracy of Imputation for Apolipoprotein E ε Alleles in Genome-Wide Genotyping Data
por: Vuoksimaa, Eero, et al.
Publicado: (2020)

Fine-Mapping and Comparative Genomic Analysis Reveal the Gene Composition at the S and Z Self-incompatibility Loci in Grasses
por: Rohner, Marius, et al.
Publicado: (2022)

Reducing Bias of Allele Frequency Estimates by Modeling SNP Genotype Data with Informative Missingness
por: Lin, Wan-Yu, et al.
Publicado: (2012)

Dombrock genotyping in Brazilian blood donors reveals different regional frequencies of the HY allele
por: Piassi, Fabiana Chagas Camargos, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_59lv6vvslt2003h7f56sbsqlcu