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(2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate

The title natural compound, isolated from Narcissus pseudonarcissus var. King Alfred crystallizes as a hemihydrate, C(14)H(13)NO(7)·0.5H(2)O, with four crystallographically independent dioxolophenanthridinone mol­ecules and two crystallographically independent solvent water mol­ecules in the asymmet...

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Autores principales: Jucov, Evgheni, Kornienko, Alexander, Masi, Marco, Evidente, Antonio, Antipin, Mikhail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3588326/
https://www.ncbi.nlm.nih.gov/pubmed/23476470
http://dx.doi.org/10.1107/S1600536812048763
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author Jucov, Evgheni
Kornienko, Alexander
Masi, Marco
Evidente, Antonio
Antipin, Mikhail
author_facet Jucov, Evgheni
Kornienko, Alexander
Masi, Marco
Evidente, Antonio
Antipin, Mikhail
author_sort Jucov, Evgheni
collection PubMed
description The title natural compound, isolated from Narcissus pseudonarcissus var. King Alfred crystallizes as a hemihydrate, C(14)H(13)NO(7)·0.5H(2)O, with four crystallographically independent dioxolophenanthridinone mol­ecules and two crystallographically independent solvent water mol­ecules in the asymmetric unit. All four crystallographically independent dioxolophenanthridinone mol­ecules are geometrically very similar and differ only in the orientations of the three hy­droxy groups at the terminal cyclo­hexene rings. The five-membered dioxolane ring has a planar conformation (the r.m.s. deviations are 0.010, 0.019, 0.025 and 0.004 Å, for the four crystallographically independent molecules), and the six-membered dihydro­pyridone and cyclo­hexene rings adopt sofa conformations in each mol­ecule. The flattened structure of each dioxolophenanthridinone mol­ecule is supported by a strong intra­molecular O—H⋯O hydrogen bond. The N atom has a slightly pyramidalized configuration. In the crystal, the dioxolophenanthridinone mol­ecules form layers parallel to (101) with O—H⋯O and N—H⋯O hydrogen bonds linking the dioxolophenanthridinone mol­ecules both within and between the layers and the water mol­ecules, forming a three-dimensional framework. The absolute configurations of the chiral centers are 2S, 3R, 4S and 4aR.
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spelling pubmed-35883262013-03-08 (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate Jucov, Evgheni Kornienko, Alexander Masi, Marco Evidente, Antonio Antipin, Mikhail Acta Crystallogr Sect E Struct Rep Online Organic Papers The title natural compound, isolated from Narcissus pseudonarcissus var. King Alfred crystallizes as a hemihydrate, C(14)H(13)NO(7)·0.5H(2)O, with four crystallographically independent dioxolophenanthridinone mol­ecules and two crystallographically independent solvent water mol­ecules in the asymmetric unit. All four crystallographically independent dioxolophenanthridinone mol­ecules are geometrically very similar and differ only in the orientations of the three hy­droxy groups at the terminal cyclo­hexene rings. The five-membered dioxolane ring has a planar conformation (the r.m.s. deviations are 0.010, 0.019, 0.025 and 0.004 Å, for the four crystallographically independent molecules), and the six-membered dihydro­pyridone and cyclo­hexene rings adopt sofa conformations in each mol­ecule. The flattened structure of each dioxolophenanthridinone mol­ecule is supported by a strong intra­molecular O—H⋯O hydrogen bond. The N atom has a slightly pyramidalized configuration. In the crystal, the dioxolophenanthridinone mol­ecules form layers parallel to (101) with O—H⋯O and N—H⋯O hydrogen bonds linking the dioxolophenanthridinone mol­ecules both within and between the layers and the water mol­ecules, forming a three-dimensional framework. The absolute configurations of the chiral centers are 2S, 3R, 4S and 4aR. International Union of Crystallography 2012-12-05 /pmc/articles/PMC3588326/ /pubmed/23476470 http://dx.doi.org/10.1107/S1600536812048763 Text en © Jucov et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Organic Papers
Jucov, Evgheni
Kornienko, Alexander
Masi, Marco
Evidente, Antonio
Antipin, Mikhail
(2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title_full (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title_fullStr (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title_full_unstemmed (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title_short (2S,3R,4S,4aR)-2,3,4,7-Tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate
title_sort (2s,3r,4s,4ar)-2,3,4,7-tetra­hydroxy-3,4,4a,5-tetra­hydro­[1,3]dioxolo[4,5-j]phenanthridin-6(2h)-one hemihydrate
topic Organic Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3588326/
https://www.ncbi.nlm.nih.gov/pubmed/23476470
http://dx.doi.org/10.1107/S1600536812048763
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